Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17240

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17230 and SGL_RS17235 are separated by 107 nucleotidesSGL_RS17235 and SGL_RS17240 are separated by 95 nucleotidesSGL_RS17240 and SGL_RS17245 are separated by 625 nucleotides SGL_RS17230: SGL_RS17230 - L-aspartate oxidase, at 3,320,075 to 3,321,736 _RS17230 SGL_RS17235: SGL_RS17235 - hypothetical protein, at 3,321,844 to 3,322,281 _RS17235 SGL_RS17240: SGL_RS17240 - photosystem I reaction center subunit PsaK, at 3,322,377 to 3,322,649 _RS17240 SGL_RS17245: SGL_RS17245 - RNA polymerase sigma factor RpoD, at 3,323,275 to 3,324,552 _RS17245 Position (kb) 3322 3323Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3321.382 kb on + strand, within SGL_RS17230at 3321.590 kb on + strandat 3321.678 kb on + strandat 3321.685 kb on - strandat 3321.860 kb on - strandat 3322.099 kb on + strand, within SGL_RS17235at 3322.123 kb on + strand, within SGL_RS17235at 3322.400 kb on + strandat 3322.494 kb on - strand, within SGL_RS17240at 3322.494 kb on - strand, within SGL_RS17240at 3322.503 kb on + strand, within SGL_RS17240at 3322.503 kb on + strand, within SGL_RS17240at 3322.512 kb on - strand, within SGL_RS17240at 3322.604 kb on - strand, within SGL_RS17240at 3322.612 kb on + strand, within SGL_RS17240

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,321,382 + SGL_RS17230 0.79 -5.7
3,321,590 + -1.9
3,321,678 + -5.9
3,321,685 - -6.4
3,321,860 - +0.2
3,322,099 + SGL_RS17235 0.58 +0.4
3,322,123 + SGL_RS17235 0.64 -0.9
3,322,400 + +0.3
3,322,494 - SGL_RS17240 0.43 +1.3
3,322,494 - SGL_RS17240 0.43 -0.2
3,322,503 + SGL_RS17240 0.46 +0.9
3,322,503 + SGL_RS17240 0.46 +0.4
3,322,512 - SGL_RS17240 0.49 +0.6
3,322,604 - SGL_RS17240 0.83 +1.4
3,322,612 + SGL_RS17240 0.86 +0.3

Or see this region's nucleotide sequence