Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16820 and SGL_RS16825 are separated by 189 nucleotides SGL_RS16825 and SGL_RS16830 are separated by 124 nucleotides SGL_RS16830 and SGL_RS16835 are separated by 18 nucleotides
SGL_RS16820: SGL_RS16820 - 4-hydroxybenzoate solanesyltransferase, at 3,228,712 to 3,229,590
_RS16820
SGL_RS16825: SGL_RS16825 - photosystem II D2 protein (photosystem q(a) protein), at 3,229,780 to 3,230,838
_RS16825
SGL_RS16830: SGL_RS16830 - ParA family protein, at 3,230,963 to 3,231,550
_RS16830
SGL_RS16835: SGL_RS16835 - ATP-binding protein, at 3,231,569 to 3,232,879
_RS16835
Position (kb)
3229
3230
3231 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 3229.032 kb on - strand, within SGL_RS16820 at 3229.107 kb on + strand, within SGL_RS16820 at 3229.281 kb on - strand, within SGL_RS16820 at 3229.442 kb on + strand, within SGL_RS16820 at 3229.573 kb on + strand at 3229.917 kb on - strand, within SGL_RS16825 at 3230.021 kb on - strand, within SGL_RS16825 at 3230.304 kb on + strand, within SGL_RS16825 at 3230.508 kb on - strand, within SGL_RS16825 at 3230.833 kb on + strand at 3231.081 kb on - strand, within SGL_RS16830 at 3231.086 kb on + strand, within SGL_RS16830 at 3231.184 kb on + strand, within SGL_RS16830 at 3231.192 kb on - strand, within SGL_RS16830 at 3231.192 kb on - strand, within SGL_RS16830 at 3231.302 kb on + strand, within SGL_RS16830 at 3231.478 kb on + strand, within SGL_RS16830 at 3231.560 kb on - strand at 3231.582 kb on + strand at 3231.590 kb on - strand at 3231.803 kb on - strand, within SGL_RS16835
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,229,032 - SGL_RS16820 0.36 -1.9 3,229,107 + SGL_RS16820 0.45 -1.6 3,229,281 - SGL_RS16820 0.65 -2.4 3,229,442 + SGL_RS16820 0.83 -2.6 3,229,573 + -6.8 3,229,917 - SGL_RS16825 0.13 -2.5 3,230,021 - SGL_RS16825 0.23 -2.0 3,230,304 + SGL_RS16825 0.49 -1.9 3,230,508 - SGL_RS16825 0.69 -2.7 3,230,833 + -1.7 3,231,081 - SGL_RS16830 0.20 -2.2 3,231,086 + SGL_RS16830 0.21 -0.2 3,231,184 + SGL_RS16830 0.38 -0.3 3,231,192 - SGL_RS16830 0.39 +0.3 3,231,192 - SGL_RS16830 0.39 -0.4 3,231,302 + SGL_RS16830 0.58 -0.0 3,231,478 + SGL_RS16830 0.88 -1.1 3,231,560 - -0.0 3,231,582 + +0.3 3,231,590 - -1.0 3,231,803 - SGL_RS16835 0.18 +0.0
Or see this region's nucleotide sequence