Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16825

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16820 and SGL_RS16825 are separated by 189 nucleotidesSGL_RS16825 and SGL_RS16830 are separated by 124 nucleotidesSGL_RS16830 and SGL_RS16835 are separated by 18 nucleotides SGL_RS16820: SGL_RS16820 - 4-hydroxybenzoate solanesyltransferase, at 3,228,712 to 3,229,590 _RS16820 SGL_RS16825: SGL_RS16825 - photosystem II D2 protein (photosystem q(a) protein), at 3,229,780 to 3,230,838 _RS16825 SGL_RS16830: SGL_RS16830 - ParA family protein, at 3,230,963 to 3,231,550 _RS16830 SGL_RS16835: SGL_RS16835 - ATP-binding protein, at 3,231,569 to 3,232,879 _RS16835 Position (kb) 3229 3230 3231Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 3229.032 kb on - strand, within SGL_RS16820at 3229.107 kb on + strand, within SGL_RS16820at 3229.281 kb on - strand, within SGL_RS16820at 3229.442 kb on + strand, within SGL_RS16820at 3229.573 kb on + strandat 3229.917 kb on - strand, within SGL_RS16825at 3230.021 kb on - strand, within SGL_RS16825at 3230.304 kb on + strand, within SGL_RS16825at 3230.508 kb on - strand, within SGL_RS16825at 3230.833 kb on + strandat 3231.081 kb on - strand, within SGL_RS16830at 3231.086 kb on + strand, within SGL_RS16830at 3231.184 kb on + strand, within SGL_RS16830at 3231.192 kb on - strand, within SGL_RS16830at 3231.192 kb on - strand, within SGL_RS16830at 3231.302 kb on + strand, within SGL_RS16830at 3231.478 kb on + strand, within SGL_RS16830at 3231.560 kb on - strandat 3231.582 kb on + strandat 3231.590 kb on - strandat 3231.803 kb on - strand, within SGL_RS16835

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,229,032 - SGL_RS16820 0.36 -1.9
3,229,107 + SGL_RS16820 0.45 -1.6
3,229,281 - SGL_RS16820 0.65 -2.4
3,229,442 + SGL_RS16820 0.83 -2.6
3,229,573 + -6.8
3,229,917 - SGL_RS16825 0.13 -2.5
3,230,021 - SGL_RS16825 0.23 -2.0
3,230,304 + SGL_RS16825 0.49 -1.9
3,230,508 - SGL_RS16825 0.69 -2.7
3,230,833 + -1.7
3,231,081 - SGL_RS16830 0.20 -2.2
3,231,086 + SGL_RS16830 0.21 -0.2
3,231,184 + SGL_RS16830 0.38 -0.3
3,231,192 - SGL_RS16830 0.39 +0.3
3,231,192 - SGL_RS16830 0.39 -0.4
3,231,302 + SGL_RS16830 0.58 -0.0
3,231,478 + SGL_RS16830 0.88 -1.1
3,231,560 - -0.0
3,231,582 + +0.3
3,231,590 - -1.0
3,231,803 - SGL_RS16835 0.18 +0.0

Or see this region's nucleotide sequence