Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15965 and SGL_RS15970 are separated by 221 nucleotides SGL_RS15970 and SGL_RS15975 are separated by 42 nucleotides SGL_RS15975 and SGL_RS15980 are separated by 245 nucleotides
SGL_RS15965: SGL_RS15965 - response regulator transcription factor, at 3,034,783 to 3,035,412
_RS15965
SGL_RS15970: SGL_RS15970 - DsbA family protein, at 3,035,634 to 3,036,191
_RS15970
SGL_RS15975: SGL_RS15975 - alpha/beta hydrolase, at 3,036,234 to 3,037,064
_RS15975
SGL_RS15980: SGL_RS15980 - SDR family oxidoreductase, at 3,037,310 to 3,038,044
_RS15980
Position (kb)
3036
3037
3038 Strain fitness (log2 ratio)
-1
0
1 at 3035.244 kb on + strand, within SGL_RS15965 at 3035.256 kb on + strand, within SGL_RS15965 at 3035.268 kb on + strand, within SGL_RS15965 at 3035.353 kb on - strand at 3035.429 kb on + strand at 3035.456 kb on - strand at 3035.703 kb on - strand, within SGL_RS15970 at 3035.796 kb on - strand, within SGL_RS15970 at 3035.824 kb on - strand, within SGL_RS15970 at 3035.926 kb on - strand, within SGL_RS15970 at 3036.300 kb on - strand at 3036.301 kb on - strand at 3036.374 kb on + strand, within SGL_RS15975 at 3036.561 kb on + strand, within SGL_RS15975 at 3036.594 kb on + strand, within SGL_RS15975 at 3036.602 kb on - strand, within SGL_RS15975 at 3036.604 kb on + strand, within SGL_RS15975 at 3036.685 kb on + strand, within SGL_RS15975 at 3036.810 kb on + strand, within SGL_RS15975 at 3036.825 kb on + strand, within SGL_RS15975 at 3036.833 kb on - strand, within SGL_RS15975 at 3036.843 kb on - strand, within SGL_RS15975 at 3036.900 kb on + strand, within SGL_RS15975 at 3036.902 kb on - strand, within SGL_RS15975 at 3036.971 kb on - strand, within SGL_RS15975 at 3036.975 kb on - strand, within SGL_RS15975 at 3036.985 kb on - strand at 3036.999 kb on - strand at 3037.010 kb on + strand at 3037.021 kb on + strand at 3037.039 kb on - strand at 3037.052 kb on - strand at 3037.112 kb on - strand at 3037.116 kb on + strand at 3037.663 kb on + strand, within SGL_RS15980 at 3037.664 kb on + strand, within SGL_RS15980 at 3037.720 kb on + strand, within SGL_RS15980 at 3037.754 kb on - strand, within SGL_RS15980 at 3037.768 kb on + strand, within SGL_RS15980 at 3037.793 kb on - strand, within SGL_RS15980 at 3037.848 kb on + strand, within SGL_RS15980 at 3037.886 kb on + strand, within SGL_RS15980 at 3037.889 kb on - strand, within SGL_RS15980 at 3037.904 kb on + strand, within SGL_RS15980 at 3037.918 kb on - strand, within SGL_RS15980 at 3037.944 kb on + strand, within SGL_RS15980 at 3037.944 kb on + strand, within SGL_RS15980 at 3037.944 kb on + strand, within SGL_RS15980 at 3037.952 kb on - strand, within SGL_RS15980 at 3037.952 kb on - strand, within SGL_RS15980 at 3037.952 kb on - strand, within SGL_RS15980 at 3038.003 kb on - strand at 3038.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,035,244 + SGL_RS15965 0.73 +0.3 3,035,256 + SGL_RS15965 0.75 -0.4 3,035,268 + SGL_RS15965 0.77 +0.1 3,035,353 - +0.6 3,035,429 + +1.0 3,035,456 - -0.5 3,035,703 - SGL_RS15970 0.12 +0.3 3,035,796 - SGL_RS15970 0.29 +0.5 3,035,824 - SGL_RS15970 0.34 +0.2 3,035,926 - SGL_RS15970 0.52 +0.2 3,036,300 - -1.2 3,036,301 - -0.6 3,036,374 + SGL_RS15975 0.17 +0.2 3,036,561 + SGL_RS15975 0.39 +0.3 3,036,594 + SGL_RS15975 0.43 +0.1 3,036,602 - SGL_RS15975 0.44 +0.3 3,036,604 + SGL_RS15975 0.45 +0.3 3,036,685 + SGL_RS15975 0.54 +0.9 3,036,810 + SGL_RS15975 0.69 -0.7 3,036,825 + SGL_RS15975 0.71 -0.1 3,036,833 - SGL_RS15975 0.72 -0.7 3,036,843 - SGL_RS15975 0.73 +0.2 3,036,900 + SGL_RS15975 0.80 -0.4 3,036,902 - SGL_RS15975 0.80 -0.1 3,036,971 - SGL_RS15975 0.89 +0.2 3,036,975 - SGL_RS15975 0.89 +0.1 3,036,985 - -0.9 3,036,999 - -0.3 3,037,010 + -0.1 3,037,021 + +0.2 3,037,039 - +0.5 3,037,052 - +0.6 3,037,112 - +0.6 3,037,116 + +0.2 3,037,663 + SGL_RS15980 0.48 -0.8 3,037,664 + SGL_RS15980 0.48 -0.7 3,037,720 + SGL_RS15980 0.56 -0.6 3,037,754 - SGL_RS15980 0.60 +0.4 3,037,768 + SGL_RS15980 0.62 +0.2 3,037,793 - SGL_RS15980 0.66 -0.4 3,037,848 + SGL_RS15980 0.73 +0.1 3,037,886 + SGL_RS15980 0.78 +0.2 3,037,889 - SGL_RS15980 0.79 -0.0 3,037,904 + SGL_RS15980 0.81 -0.0 3,037,918 - SGL_RS15980 0.83 +0.0 3,037,944 + SGL_RS15980 0.86 +0.1 3,037,944 + SGL_RS15980 0.86 +1.0 3,037,944 + SGL_RS15980 0.86 +0.5 3,037,952 - SGL_RS15980 0.87 +0.4 3,037,952 - SGL_RS15980 0.87 -0.5 3,037,952 - SGL_RS15980 0.87 -0.7 3,038,003 - +0.3 3,038,058 + +1.2
Or see this region's nucleotide sequence