Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15975

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15965 and SGL_RS15970 are separated by 221 nucleotidesSGL_RS15970 and SGL_RS15975 are separated by 42 nucleotidesSGL_RS15975 and SGL_RS15980 are separated by 245 nucleotides SGL_RS15965: SGL_RS15965 - response regulator transcription factor, at 3,034,783 to 3,035,412 _RS15965 SGL_RS15970: SGL_RS15970 - DsbA family protein, at 3,035,634 to 3,036,191 _RS15970 SGL_RS15975: SGL_RS15975 - alpha/beta hydrolase, at 3,036,234 to 3,037,064 _RS15975 SGL_RS15980: SGL_RS15980 - SDR family oxidoreductase, at 3,037,310 to 3,038,044 _RS15980 Position (kb) 3036 3037 3038Strain fitness (log2 ratio) -1 0 1at 3035.244 kb on + strand, within SGL_RS15965at 3035.256 kb on + strand, within SGL_RS15965at 3035.268 kb on + strand, within SGL_RS15965at 3035.353 kb on - strandat 3035.429 kb on + strandat 3035.456 kb on - strandat 3035.703 kb on - strand, within SGL_RS15970at 3035.796 kb on - strand, within SGL_RS15970at 3035.824 kb on - strand, within SGL_RS15970at 3035.926 kb on - strand, within SGL_RS15970at 3036.300 kb on - strandat 3036.301 kb on - strandat 3036.374 kb on + strand, within SGL_RS15975at 3036.561 kb on + strand, within SGL_RS15975at 3036.594 kb on + strand, within SGL_RS15975at 3036.602 kb on - strand, within SGL_RS15975at 3036.604 kb on + strand, within SGL_RS15975at 3036.685 kb on + strand, within SGL_RS15975at 3036.810 kb on + strand, within SGL_RS15975at 3036.825 kb on + strand, within SGL_RS15975at 3036.833 kb on - strand, within SGL_RS15975at 3036.843 kb on - strand, within SGL_RS15975at 3036.900 kb on + strand, within SGL_RS15975at 3036.902 kb on - strand, within SGL_RS15975at 3036.971 kb on - strand, within SGL_RS15975at 3036.975 kb on - strand, within SGL_RS15975at 3036.985 kb on - strandat 3036.999 kb on - strandat 3037.010 kb on + strandat 3037.021 kb on + strandat 3037.039 kb on - strandat 3037.052 kb on - strandat 3037.112 kb on - strandat 3037.116 kb on + strandat 3037.663 kb on + strand, within SGL_RS15980at 3037.664 kb on + strand, within SGL_RS15980at 3037.720 kb on + strand, within SGL_RS15980at 3037.754 kb on - strand, within SGL_RS15980at 3037.768 kb on + strand, within SGL_RS15980at 3037.793 kb on - strand, within SGL_RS15980at 3037.848 kb on + strand, within SGL_RS15980at 3037.886 kb on + strand, within SGL_RS15980at 3037.889 kb on - strand, within SGL_RS15980at 3037.904 kb on + strand, within SGL_RS15980at 3037.918 kb on - strand, within SGL_RS15980at 3037.944 kb on + strand, within SGL_RS15980at 3037.944 kb on + strand, within SGL_RS15980at 3037.944 kb on + strand, within SGL_RS15980at 3037.952 kb on - strand, within SGL_RS15980at 3037.952 kb on - strand, within SGL_RS15980at 3037.952 kb on - strand, within SGL_RS15980at 3038.003 kb on - strandat 3038.058 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,035,244 + SGL_RS15965 0.73 +0.3
3,035,256 + SGL_RS15965 0.75 -0.4
3,035,268 + SGL_RS15965 0.77 +0.1
3,035,353 - +0.6
3,035,429 + +1.0
3,035,456 - -0.5
3,035,703 - SGL_RS15970 0.12 +0.3
3,035,796 - SGL_RS15970 0.29 +0.5
3,035,824 - SGL_RS15970 0.34 +0.2
3,035,926 - SGL_RS15970 0.52 +0.2
3,036,300 - -1.2
3,036,301 - -0.6
3,036,374 + SGL_RS15975 0.17 +0.2
3,036,561 + SGL_RS15975 0.39 +0.3
3,036,594 + SGL_RS15975 0.43 +0.1
3,036,602 - SGL_RS15975 0.44 +0.3
3,036,604 + SGL_RS15975 0.45 +0.3
3,036,685 + SGL_RS15975 0.54 +0.9
3,036,810 + SGL_RS15975 0.69 -0.7
3,036,825 + SGL_RS15975 0.71 -0.1
3,036,833 - SGL_RS15975 0.72 -0.7
3,036,843 - SGL_RS15975 0.73 +0.2
3,036,900 + SGL_RS15975 0.80 -0.4
3,036,902 - SGL_RS15975 0.80 -0.1
3,036,971 - SGL_RS15975 0.89 +0.2
3,036,975 - SGL_RS15975 0.89 +0.1
3,036,985 - -0.9
3,036,999 - -0.3
3,037,010 + -0.1
3,037,021 + +0.2
3,037,039 - +0.5
3,037,052 - +0.6
3,037,112 - +0.6
3,037,116 + +0.2
3,037,663 + SGL_RS15980 0.48 -0.8
3,037,664 + SGL_RS15980 0.48 -0.7
3,037,720 + SGL_RS15980 0.56 -0.6
3,037,754 - SGL_RS15980 0.60 +0.4
3,037,768 + SGL_RS15980 0.62 +0.2
3,037,793 - SGL_RS15980 0.66 -0.4
3,037,848 + SGL_RS15980 0.73 +0.1
3,037,886 + SGL_RS15980 0.78 +0.2
3,037,889 - SGL_RS15980 0.79 -0.0
3,037,904 + SGL_RS15980 0.81 -0.0
3,037,918 - SGL_RS15980 0.83 +0.0
3,037,944 + SGL_RS15980 0.86 +0.1
3,037,944 + SGL_RS15980 0.86 +1.0
3,037,944 + SGL_RS15980 0.86 +0.5
3,037,952 - SGL_RS15980 0.87 +0.4
3,037,952 - SGL_RS15980 0.87 -0.5
3,037,952 - SGL_RS15980 0.87 -0.7
3,038,003 - +0.3
3,038,058 + +1.2

Or see this region's nucleotide sequence