Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15655 and SGL_RS15660 are separated by 58 nucleotides SGL_RS15660 and SGL_RS15665 are separated by 169 nucleotides SGL_RS15665 and SGL_RS15670 are separated by 57 nucleotides
SGL_RS15655: SGL_RS15655 - asparaginase, at 2,961,619 to 2,962,647
_RS15655
SGL_RS15660: SGL_RS15660 - CGLD27 family protein, at 2,962,706 to 2,963,227
_RS15660
SGL_RS15665: SGL_RS15665 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 2,963,397 to 2,964,512
_RS15665
SGL_RS15670: SGL_RS15670 - sodium/glutamate symporter, at 2,964,570 to 2,966,033
_RS15670
Position (kb)
2963
2964
2965 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2962.417 kb on + strand, within SGL_RS15655 at 2962.449 kb on + strand, within SGL_RS15655 at 2962.495 kb on + strand, within SGL_RS15655 at 2962.549 kb on - strand at 2962.707 kb on - strand at 2962.768 kb on - strand, within SGL_RS15660 at 2962.921 kb on + strand, within SGL_RS15660 at 2962.934 kb on - strand, within SGL_RS15660 at 2963.075 kb on + strand, within SGL_RS15660 at 2963.075 kb on + strand, within SGL_RS15660 at 2963.082 kb on - strand, within SGL_RS15660 at 2963.089 kb on + strand, within SGL_RS15660 at 2963.118 kb on - strand, within SGL_RS15660 at 2963.190 kb on + strand at 2963.198 kb on - strand at 2963.203 kb on - strand at 2963.257 kb on + strand at 2963.303 kb on - strand at 2963.369 kb on + strand at 2963.393 kb on + strand at 2963.401 kb on - strand at 2964.744 kb on - strand, within SGL_RS15670 at 2964.775 kb on - strand, within SGL_RS15670 at 2964.814 kb on + strand, within SGL_RS15670 at 2964.818 kb on - strand, within SGL_RS15670 at 2964.824 kb on - strand, within SGL_RS15670 at 2965.129 kb on - strand, within SGL_RS15670 at 2965.283 kb on - strand, within SGL_RS15670 at 2965.364 kb on - strand, within SGL_RS15670
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,962,417 + SGL_RS15655 0.78 -3.0 2,962,449 + SGL_RS15655 0.81 -3.9 2,962,495 + SGL_RS15655 0.85 -4.3 2,962,549 - +0.9 2,962,707 - +0.2 2,962,768 - SGL_RS15660 0.12 +0.1 2,962,921 + SGL_RS15660 0.41 +0.3 2,962,934 - SGL_RS15660 0.44 -0.2 2,963,075 + SGL_RS15660 0.71 -1.3 2,963,075 + SGL_RS15660 0.71 -1.4 2,963,082 - SGL_RS15660 0.72 -0.8 2,963,089 + SGL_RS15660 0.73 -0.2 2,963,118 - SGL_RS15660 0.79 -0.7 2,963,190 + +0.2 2,963,198 - -0.6 2,963,203 - +0.3 2,963,257 + +1.2 2,963,303 - +0.8 2,963,369 + -3.3 2,963,393 + -1.1 2,963,401 - -4.2 2,964,744 - SGL_RS15670 0.12 +0.9 2,964,775 - SGL_RS15670 0.14 +0.2 2,964,814 + SGL_RS15670 0.17 -0.1 2,964,818 - SGL_RS15670 0.17 +0.1 2,964,824 - SGL_RS15670 0.17 +0.2 2,965,129 - SGL_RS15670 0.38 -0.2 2,965,283 - SGL_RS15670 0.49 +0.2 2,965,364 - SGL_RS15670 0.54 -0.5
Or see this region's nucleotide sequence