Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15405

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15395 and SGL_RS15400 are separated by 17 nucleotidesSGL_RS15400 and SGL_RS15405 are separated by 116 nucleotidesSGL_RS15405 and SGL_RS15410 are separated by 109 nucleotidesSGL_RS15410 and SGL_RS15415 are separated by 173 nucleotides SGL_RS15395: SGL_RS15395 - imidazoleglycerol-phosphate dehydratase HisB, at 2,906,797 to 2,907,429 _RS15395 SGL_RS15400: SGL_RS15400 - Uma2 family endonuclease, at 2,907,447 to 2,908,058 _RS15400 SGL_RS15405: SGL_RS15405 - methyltransferase domain-containing protein, at 2,908,175 to 2,909,383 _RS15405 SGL_RS15410: SGL_RS15410 - circadian clock KaiB family protein, at 2,909,493 to 2,909,801 _RS15410 SGL_RS15415: SGL_RS15415 - response regulator, at 2,909,975 to 2,910,895 _RS15415 Position (kb) 2908 2909 2910Strain fitness (log2 ratio) -1 0 1 2at 2907.542 kb on + strand, within SGL_RS15400at 2907.728 kb on - strand, within SGL_RS15400at 2907.786 kb on - strand, within SGL_RS15400at 2907.788 kb on + strand, within SGL_RS15400at 2907.789 kb on + strand, within SGL_RS15400at 2907.796 kb on - strand, within SGL_RS15400at 2907.797 kb on - strand, within SGL_RS15400at 2907.815 kb on - strand, within SGL_RS15400at 2907.828 kb on + strand, within SGL_RS15400at 2907.855 kb on - strand, within SGL_RS15400at 2908.072 kb on + strandat 2908.190 kb on + strandat 2908.191 kb on + strandat 2908.396 kb on + strand, within SGL_RS15405at 2908.396 kb on + strand, within SGL_RS15405at 2908.406 kb on + strand, within SGL_RS15405at 2908.643 kb on + strand, within SGL_RS15405at 2908.698 kb on - strand, within SGL_RS15405at 2908.717 kb on - strand, within SGL_RS15405at 2908.717 kb on - strand, within SGL_RS15405at 2908.774 kb on - strand, within SGL_RS15405at 2909.070 kb on - strand, within SGL_RS15405at 2909.108 kb on + strand, within SGL_RS15405at 2909.126 kb on + strand, within SGL_RS15405at 2909.306 kb on + strandat 2909.314 kb on - strandat 2909.321 kb on - strandat 2909.322 kb on - strandat 2909.334 kb on + strandat 2909.334 kb on + strandat 2909.334 kb on + strandat 2909.344 kb on - strandat 2909.345 kb on + strandat 2909.345 kb on + strandat 2909.353 kb on - strandat 2909.370 kb on + strandat 2909.378 kb on - strandat 2909.423 kb on - strandat 2909.623 kb on - strand, within SGL_RS15410at 2909.650 kb on + strand, within SGL_RS15410at 2910.217 kb on - strand, within SGL_RS15415at 2910.365 kb on + strand, within SGL_RS15415

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,907,542 + SGL_RS15400 0.16 -0.1
2,907,728 - SGL_RS15400 0.46 +0.6
2,907,786 - SGL_RS15400 0.55 -1.0
2,907,788 + SGL_RS15400 0.56 +0.2
2,907,789 + SGL_RS15400 0.56 +0.3
2,907,796 - SGL_RS15400 0.57 +0.4
2,907,797 - SGL_RS15400 0.57 -0.8
2,907,815 - SGL_RS15400 0.60 -0.7
2,907,828 + SGL_RS15400 0.62 +0.3
2,907,855 - SGL_RS15400 0.67 +0.3
2,908,072 + -0.6
2,908,190 + +0.3
2,908,191 + +0.7
2,908,396 + SGL_RS15405 0.18 +1.5
2,908,396 + SGL_RS15405 0.18 +1.0
2,908,406 + SGL_RS15405 0.19 +1.6
2,908,643 + SGL_RS15405 0.39 +1.6
2,908,698 - SGL_RS15405 0.43 +1.3
2,908,717 - SGL_RS15405 0.45 +1.3
2,908,717 - SGL_RS15405 0.45 +0.7
2,908,774 - SGL_RS15405 0.50 +0.6
2,909,070 - SGL_RS15405 0.74 +1.5
2,909,108 + SGL_RS15405 0.77 +1.5
2,909,126 + SGL_RS15405 0.79 +1.3
2,909,306 + +0.8
2,909,314 - +1.3
2,909,321 - +1.1
2,909,322 - +1.5
2,909,334 + +0.7
2,909,334 + +0.6
2,909,334 + +1.5
2,909,344 - +1.5
2,909,345 + +0.4
2,909,345 + +1.3
2,909,353 - +0.7
2,909,370 + +2.1
2,909,378 - +1.1
2,909,423 - +1.0
2,909,623 - SGL_RS15410 0.42 +0.8
2,909,650 + SGL_RS15410 0.51 +0.7
2,910,217 - SGL_RS15415 0.26 -0.6
2,910,365 + SGL_RS15415 0.42 -0.4

Or see this region's nucleotide sequence