Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15395 and SGL_RS15400 are separated by 17 nucleotides SGL_RS15400 and SGL_RS15405 are separated by 116 nucleotides SGL_RS15405 and SGL_RS15410 are separated by 109 nucleotides SGL_RS15410 and SGL_RS15415 are separated by 173 nucleotides
SGL_RS15395: SGL_RS15395 - imidazoleglycerol-phosphate dehydratase HisB, at 2,906,797 to 2,907,429
_RS15395
SGL_RS15400: SGL_RS15400 - Uma2 family endonuclease, at 2,907,447 to 2,908,058
_RS15400
SGL_RS15405: SGL_RS15405 - methyltransferase domain-containing protein, at 2,908,175 to 2,909,383
_RS15405
SGL_RS15410: SGL_RS15410 - circadian clock KaiB family protein, at 2,909,493 to 2,909,801
_RS15410
SGL_RS15415: SGL_RS15415 - response regulator, at 2,909,975 to 2,910,895
_RS15415
Position (kb)
2908
2909
2910 Strain fitness (log2 ratio)
-1
0
1
2 at 2907.542 kb on + strand, within SGL_RS15400 at 2907.728 kb on - strand, within SGL_RS15400 at 2907.786 kb on - strand, within SGL_RS15400 at 2907.788 kb on + strand, within SGL_RS15400 at 2907.789 kb on + strand, within SGL_RS15400 at 2907.796 kb on - strand, within SGL_RS15400 at 2907.797 kb on - strand, within SGL_RS15400 at 2907.815 kb on - strand, within SGL_RS15400 at 2907.828 kb on + strand, within SGL_RS15400 at 2907.855 kb on - strand, within SGL_RS15400 at 2908.072 kb on + strand at 2908.190 kb on + strand at 2908.191 kb on + strand at 2908.396 kb on + strand, within SGL_RS15405 at 2908.396 kb on + strand, within SGL_RS15405 at 2908.406 kb on + strand, within SGL_RS15405 at 2908.643 kb on + strand, within SGL_RS15405 at 2908.698 kb on - strand, within SGL_RS15405 at 2908.717 kb on - strand, within SGL_RS15405 at 2908.717 kb on - strand, within SGL_RS15405 at 2908.774 kb on - strand, within SGL_RS15405 at 2909.070 kb on - strand, within SGL_RS15405 at 2909.108 kb on + strand, within SGL_RS15405 at 2909.126 kb on + strand, within SGL_RS15405 at 2909.306 kb on + strand at 2909.314 kb on - strand at 2909.321 kb on - strand at 2909.322 kb on - strand at 2909.334 kb on + strand at 2909.334 kb on + strand at 2909.334 kb on + strand at 2909.344 kb on - strand at 2909.345 kb on + strand at 2909.345 kb on + strand at 2909.353 kb on - strand at 2909.370 kb on + strand at 2909.378 kb on - strand at 2909.423 kb on - strand at 2909.623 kb on - strand, within SGL_RS15410 at 2909.650 kb on + strand, within SGL_RS15410 at 2910.217 kb on - strand, within SGL_RS15415 at 2910.365 kb on + strand, within SGL_RS15415
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,907,542 + SGL_RS15400 0.16 -0.1 2,907,728 - SGL_RS15400 0.46 +0.6 2,907,786 - SGL_RS15400 0.55 -1.0 2,907,788 + SGL_RS15400 0.56 +0.2 2,907,789 + SGL_RS15400 0.56 +0.3 2,907,796 - SGL_RS15400 0.57 +0.4 2,907,797 - SGL_RS15400 0.57 -0.8 2,907,815 - SGL_RS15400 0.60 -0.7 2,907,828 + SGL_RS15400 0.62 +0.3 2,907,855 - SGL_RS15400 0.67 +0.3 2,908,072 + -0.6 2,908,190 + +0.3 2,908,191 + +0.7 2,908,396 + SGL_RS15405 0.18 +1.5 2,908,396 + SGL_RS15405 0.18 +1.0 2,908,406 + SGL_RS15405 0.19 +1.6 2,908,643 + SGL_RS15405 0.39 +1.6 2,908,698 - SGL_RS15405 0.43 +1.3 2,908,717 - SGL_RS15405 0.45 +1.3 2,908,717 - SGL_RS15405 0.45 +0.7 2,908,774 - SGL_RS15405 0.50 +0.6 2,909,070 - SGL_RS15405 0.74 +1.5 2,909,108 + SGL_RS15405 0.77 +1.5 2,909,126 + SGL_RS15405 0.79 +1.3 2,909,306 + +0.8 2,909,314 - +1.3 2,909,321 - +1.1 2,909,322 - +1.5 2,909,334 + +0.7 2,909,334 + +0.6 2,909,334 + +1.5 2,909,344 - +1.5 2,909,345 + +0.4 2,909,345 + +1.3 2,909,353 - +0.7 2,909,370 + +2.1 2,909,378 - +1.1 2,909,423 - +1.0 2,909,623 - SGL_RS15410 0.42 +0.8 2,909,650 + SGL_RS15410 0.51 +0.7 2,910,217 - SGL_RS15415 0.26 -0.6 2,910,365 + SGL_RS15415 0.42 -0.4
Or see this region's nucleotide sequence