Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15075

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15070 and SGL_RS15075 are separated by 25 nucleotidesSGL_RS15075 and SGL_RS19055 are separated by 94 nucleotidesSGL_RS19055 and SGL_RS15080 are separated by 96 nucleotidesSGL_RS15080 and SGL_RS15085 are separated by 265 nucleotides SGL_RS15070: SGL_RS15070 - GDP-L-fucose synthase, at 2,828,140 to 2,829,072 _RS15070 SGL_RS15075: SGL_RS15075 - S9 family peptidase, at 2,829,098 to 2,831,011 _RS15075 SGL_RS19055: SGL_RS19055 - 50S ribosomal protein L33, at 2,831,106 to 2,831,303 _RS19055 SGL_RS15080: SGL_RS15080 - 30S ribosomal protein S18, at 2,831,400 to 2,831,615 _RS15080 SGL_RS15085: SGL_RS15085 - alanine racemase, at 2,831,881 to 2,833,083 _RS15085 Position (kb) 2829 2830 2831 2832Strain fitness (log2 ratio) -2 -1 0 1at 2829.188 kb on - strandat 2829.188 kb on - strandat 2829.205 kb on - strandat 2829.407 kb on - strand, within SGL_RS15075at 2829.631 kb on + strand, within SGL_RS15075at 2829.644 kb on - strand, within SGL_RS15075at 2829.668 kb on - strand, within SGL_RS15075at 2829.858 kb on - strand, within SGL_RS15075at 2829.885 kb on - strand, within SGL_RS15075at 2829.939 kb on + strand, within SGL_RS15075at 2829.939 kb on + strand, within SGL_RS15075at 2829.990 kb on + strand, within SGL_RS15075at 2830.048 kb on + strand, within SGL_RS15075at 2830.056 kb on - strand, within SGL_RS15075at 2830.206 kb on + strand, within SGL_RS15075at 2830.214 kb on - strand, within SGL_RS15075at 2830.219 kb on - strand, within SGL_RS15075at 2830.328 kb on + strand, within SGL_RS15075at 2830.342 kb on - strand, within SGL_RS15075at 2830.405 kb on - strand, within SGL_RS15075at 2830.476 kb on - strand, within SGL_RS15075at 2830.492 kb on - strand, within SGL_RS15075at 2830.532 kb on + strand, within SGL_RS15075at 2830.538 kb on + strand, within SGL_RS15075at 2830.590 kb on + strand, within SGL_RS15075at 2830.590 kb on + strand, within SGL_RS15075at 2830.590 kb on + strand, within SGL_RS15075at 2830.613 kb on + strand, within SGL_RS15075at 2830.648 kb on - strand, within SGL_RS15075at 2830.667 kb on + strand, within SGL_RS15075at 2830.786 kb on - strand, within SGL_RS15075at 2830.791 kb on - strand, within SGL_RS15075at 2830.871 kb on + strandat 2830.989 kb on + strandat 2830.989 kb on + strandat 2830.997 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,829,188 - -1.6
2,829,188 - -0.6
2,829,205 - -1.3
2,829,407 - SGL_RS15075 0.16 -0.9
2,829,631 + SGL_RS15075 0.28 -0.8
2,829,644 - SGL_RS15075 0.29 -1.8
2,829,668 - SGL_RS15075 0.30 -0.1
2,829,858 - SGL_RS15075 0.40 -1.1
2,829,885 - SGL_RS15075 0.41 -0.6
2,829,939 + SGL_RS15075 0.44 -1.9
2,829,939 + SGL_RS15075 0.44 -0.6
2,829,990 + SGL_RS15075 0.47 -1.7
2,830,048 + SGL_RS15075 0.50 -0.8
2,830,056 - SGL_RS15075 0.50 -1.5
2,830,206 + SGL_RS15075 0.58 -0.7
2,830,214 - SGL_RS15075 0.58 -0.8
2,830,219 - SGL_RS15075 0.59 -1.2
2,830,328 + SGL_RS15075 0.64 -0.4
2,830,342 - SGL_RS15075 0.65 -1.7
2,830,405 - SGL_RS15075 0.68 -0.9
2,830,476 - SGL_RS15075 0.72 -2.3
2,830,492 - SGL_RS15075 0.73 -1.7
2,830,532 + SGL_RS15075 0.75 -1.1
2,830,538 + SGL_RS15075 0.75 -0.4
2,830,590 + SGL_RS15075 0.78 -1.0
2,830,590 + SGL_RS15075 0.78 -2.2
2,830,590 + SGL_RS15075 0.78 +0.9
2,830,613 + SGL_RS15075 0.79 -0.6
2,830,648 - SGL_RS15075 0.81 -1.6
2,830,667 + SGL_RS15075 0.82 -0.3
2,830,786 - SGL_RS15075 0.88 -1.9
2,830,791 - SGL_RS15075 0.88 -1.5
2,830,871 + -1.0
2,830,989 + +0.7
2,830,989 + +0.6
2,830,997 - +0.2

Or see this region's nucleotide sequence