Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15070 and SGL_RS15075 are separated by 25 nucleotides SGL_RS15075 and SGL_RS19055 are separated by 94 nucleotides SGL_RS19055 and SGL_RS15080 are separated by 96 nucleotides SGL_RS15080 and SGL_RS15085 are separated by 265 nucleotides
SGL_RS15070: SGL_RS15070 - GDP-L-fucose synthase, at 2,828,140 to 2,829,072
_RS15070
SGL_RS15075: SGL_RS15075 - S9 family peptidase, at 2,829,098 to 2,831,011
_RS15075
SGL_RS19055: SGL_RS19055 - 50S ribosomal protein L33, at 2,831,106 to 2,831,303
_RS19055
SGL_RS15080: SGL_RS15080 - 30S ribosomal protein S18, at 2,831,400 to 2,831,615
_RS15080
SGL_RS15085: SGL_RS15085 - alanine racemase, at 2,831,881 to 2,833,083
_RS15085
Position (kb)
2829
2830
2831
2832 Strain fitness (log2 ratio)
-2
-1
0
1 at 2829.188 kb on - strand at 2829.188 kb on - strand at 2829.205 kb on - strand at 2829.407 kb on - strand, within SGL_RS15075 at 2829.631 kb on + strand, within SGL_RS15075 at 2829.644 kb on - strand, within SGL_RS15075 at 2829.668 kb on - strand, within SGL_RS15075 at 2829.858 kb on - strand, within SGL_RS15075 at 2829.885 kb on - strand, within SGL_RS15075 at 2829.939 kb on + strand, within SGL_RS15075 at 2829.939 kb on + strand, within SGL_RS15075 at 2829.990 kb on + strand, within SGL_RS15075 at 2830.048 kb on + strand, within SGL_RS15075 at 2830.056 kb on - strand, within SGL_RS15075 at 2830.206 kb on + strand, within SGL_RS15075 at 2830.214 kb on - strand, within SGL_RS15075 at 2830.219 kb on - strand, within SGL_RS15075 at 2830.328 kb on + strand, within SGL_RS15075 at 2830.342 kb on - strand, within SGL_RS15075 at 2830.405 kb on - strand, within SGL_RS15075 at 2830.476 kb on - strand, within SGL_RS15075 at 2830.492 kb on - strand, within SGL_RS15075 at 2830.532 kb on + strand, within SGL_RS15075 at 2830.538 kb on + strand, within SGL_RS15075 at 2830.590 kb on + strand, within SGL_RS15075 at 2830.590 kb on + strand, within SGL_RS15075 at 2830.590 kb on + strand, within SGL_RS15075 at 2830.613 kb on + strand, within SGL_RS15075 at 2830.648 kb on - strand, within SGL_RS15075 at 2830.667 kb on + strand, within SGL_RS15075 at 2830.786 kb on - strand, within SGL_RS15075 at 2830.791 kb on - strand, within SGL_RS15075 at 2830.871 kb on + strand at 2830.989 kb on + strand at 2830.989 kb on + strand at 2830.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,829,188 - -1.6 2,829,188 - -0.6 2,829,205 - -1.3 2,829,407 - SGL_RS15075 0.16 -0.9 2,829,631 + SGL_RS15075 0.28 -0.8 2,829,644 - SGL_RS15075 0.29 -1.8 2,829,668 - SGL_RS15075 0.30 -0.1 2,829,858 - SGL_RS15075 0.40 -1.1 2,829,885 - SGL_RS15075 0.41 -0.6 2,829,939 + SGL_RS15075 0.44 -1.9 2,829,939 + SGL_RS15075 0.44 -0.6 2,829,990 + SGL_RS15075 0.47 -1.7 2,830,048 + SGL_RS15075 0.50 -0.8 2,830,056 - SGL_RS15075 0.50 -1.5 2,830,206 + SGL_RS15075 0.58 -0.7 2,830,214 - SGL_RS15075 0.58 -0.8 2,830,219 - SGL_RS15075 0.59 -1.2 2,830,328 + SGL_RS15075 0.64 -0.4 2,830,342 - SGL_RS15075 0.65 -1.7 2,830,405 - SGL_RS15075 0.68 -0.9 2,830,476 - SGL_RS15075 0.72 -2.3 2,830,492 - SGL_RS15075 0.73 -1.7 2,830,532 + SGL_RS15075 0.75 -1.1 2,830,538 + SGL_RS15075 0.75 -0.4 2,830,590 + SGL_RS15075 0.78 -1.0 2,830,590 + SGL_RS15075 0.78 -2.2 2,830,590 + SGL_RS15075 0.78 +0.9 2,830,613 + SGL_RS15075 0.79 -0.6 2,830,648 - SGL_RS15075 0.81 -1.6 2,830,667 + SGL_RS15075 0.82 -0.3 2,830,786 - SGL_RS15075 0.88 -1.9 2,830,791 - SGL_RS15075 0.88 -1.5 2,830,871 + -1.0 2,830,989 + +0.7 2,830,989 + +0.6 2,830,997 - +0.2
Or see this region's nucleotide sequence