Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15025

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15020 and SGL_RS15025 are separated by 126 nucleotidesSGL_RS15025 and SGL_RS15030 are separated by 16 nucleotides SGL_RS15020: SGL_RS15020 - cytochrome P450, at 2,817,862 to 2,819,196 _RS15020 SGL_RS15025: SGL_RS15025 - DUF2854 domain-containing protein, at 2,819,323 to 2,819,877 _RS15025 SGL_RS15030: SGL_RS15030 - acetate--CoA ligase, at 2,819,894 to 2,821,855 _RS15030 Position (kb) 2819 2820Strain fitness (log2 ratio) -2 -1 0 1at 2818.520 kb on - strand, within SGL_RS15020at 2818.764 kb on + strand, within SGL_RS15020at 2818.972 kb on - strand, within SGL_RS15020at 2819.124 kb on - strandat 2819.406 kb on + strand, within SGL_RS15025at 2819.425 kb on - strand, within SGL_RS15025at 2819.487 kb on + strand, within SGL_RS15025at 2819.675 kb on + strand, within SGL_RS15025at 2819.737 kb on + strand, within SGL_RS15025at 2819.899 kb on - strandat 2819.899 kb on - strandat 2819.899 kb on - strandat 2819.902 kb on + strandat 2819.902 kb on + strandat 2819.902 kb on + strandat 2820.120 kb on + strand, within SGL_RS15030at 2820.120 kb on + strand, within SGL_RS15030at 2820.128 kb on - strand, within SGL_RS15030at 2820.341 kb on + strand, within SGL_RS15030at 2820.412 kb on - strand, within SGL_RS15030at 2820.493 kb on - strand, within SGL_RS15030at 2820.555 kb on + strand, within SGL_RS15030at 2820.558 kb on - strand, within SGL_RS15030at 2820.568 kb on - strand, within SGL_RS15030at 2820.687 kb on + strand, within SGL_RS15030at 2820.757 kb on + strand, within SGL_RS15030at 2820.798 kb on - strand, within SGL_RS15030at 2820.839 kb on + strand, within SGL_RS15030

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,818,520 - SGL_RS15020 0.49 +0.8
2,818,764 + SGL_RS15020 0.68 +1.6
2,818,972 - SGL_RS15020 0.83 +0.5
2,819,124 - +0.6
2,819,406 + SGL_RS15025 0.15 -2.0
2,819,425 - SGL_RS15025 0.18 -1.2
2,819,487 + SGL_RS15025 0.30 -2.7
2,819,675 + SGL_RS15025 0.63 -1.3
2,819,737 + SGL_RS15025 0.75 -2.1
2,819,899 - +0.1
2,819,899 - -1.3
2,819,899 - -0.3
2,819,902 + -0.5
2,819,902 + -0.9
2,819,902 + +0.6
2,820,120 + SGL_RS15030 0.12 +1.1
2,820,120 + SGL_RS15030 0.12 +1.1
2,820,128 - SGL_RS15030 0.12 +1.0
2,820,341 + SGL_RS15030 0.23 +0.8
2,820,412 - SGL_RS15030 0.26 +0.8
2,820,493 - SGL_RS15030 0.31 +0.9
2,820,555 + SGL_RS15030 0.34 +1.4
2,820,558 - SGL_RS15030 0.34 +0.5
2,820,568 - SGL_RS15030 0.34 -0.1
2,820,687 + SGL_RS15030 0.40 +0.1
2,820,757 + SGL_RS15030 0.44 -0.3
2,820,798 - SGL_RS15030 0.46 +0.7
2,820,839 + SGL_RS15030 0.48 +1.1

Or see this region's nucleotide sequence