Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14955

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14950 and SGL_RS14955 are separated by 151 nucleotidesSGL_RS14955 and SGL_RS14960 are separated by 122 nucleotides SGL_RS14950: SGL_RS14950 - vitamin K epoxide reductase family protein, at 2,806,082 to 2,807,059 _RS14950 SGL_RS14955: SGL_RS14955 - diflavin flavoprotein, at 2,807,211 to 2,808,932 _RS14955 SGL_RS14960: SGL_RS14960 - PHP domain-containing protein, at 2,809,055 to 2,809,804 _RS14960 Position (kb) 2807 2808 2809Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2807.074 kb on + strandat 2807.109 kb on + strandat 2807.159 kb on - strandat 2807.246 kb on - strandat 2807.294 kb on + strandat 2807.308 kb on + strandat 2807.330 kb on + strandat 2807.572 kb on - strand, within SGL_RS14955at 2807.596 kb on + strand, within SGL_RS14955at 2807.958 kb on - strand, within SGL_RS14955at 2807.997 kb on + strand, within SGL_RS14955at 2807.997 kb on + strand, within SGL_RS14955at 2808.033 kb on + strand, within SGL_RS14955at 2808.087 kb on + strand, within SGL_RS14955at 2808.213 kb on + strand, within SGL_RS14955at 2808.376 kb on + strand, within SGL_RS14955at 2808.428 kb on + strand, within SGL_RS14955at 2808.428 kb on + strand, within SGL_RS14955at 2808.446 kb on + strand, within SGL_RS14955at 2808.454 kb on - strand, within SGL_RS14955at 2808.454 kb on - strand, within SGL_RS14955at 2808.639 kb on + strand, within SGL_RS14955at 2808.647 kb on - strand, within SGL_RS14955at 2808.694 kb on + strand, within SGL_RS14955at 2808.723 kb on - strand, within SGL_RS14955at 2808.768 kb on - strandat 2808.836 kb on + strandat 2808.844 kb on - strandat 2808.889 kb on - strandat 2808.972 kb on + strandat 2808.972 kb on + strandat 2808.972 kb on + strandat 2808.980 kb on - strandat 2809.032 kb on + strandat 2809.053 kb on + strandat 2809.085 kb on + strandat 2809.101 kb on - strandat 2809.274 kb on + strand, within SGL_RS14960at 2809.282 kb on + strand, within SGL_RS14960at 2809.370 kb on + strand, within SGL_RS14960at 2809.378 kb on - strand, within SGL_RS14960at 2809.405 kb on - strand, within SGL_RS14960at 2809.417 kb on + strand, within SGL_RS14960at 2809.425 kb on - strand, within SGL_RS14960at 2809.513 kb on - strand, within SGL_RS14960at 2809.541 kb on - strand, within SGL_RS14960at 2809.587 kb on + strand, within SGL_RS14960at 2809.795 kb on - strandat 2809.854 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,807,074 + -0.7
2,807,109 + -0.3
2,807,159 - +0.6
2,807,246 - -2.5
2,807,294 + -2.7
2,807,308 + -1.9
2,807,330 + -2.8
2,807,572 - SGL_RS14955 0.21 -3.9
2,807,596 + SGL_RS14955 0.22 -2.9
2,807,958 - SGL_RS14955 0.43 -2.2
2,807,997 + SGL_RS14955 0.46 -1.9
2,807,997 + SGL_RS14955 0.46 -3.1
2,808,033 + SGL_RS14955 0.48 -3.3
2,808,087 + SGL_RS14955 0.51 -2.5
2,808,213 + SGL_RS14955 0.58 -3.2
2,808,376 + SGL_RS14955 0.68 -2.3
2,808,428 + SGL_RS14955 0.71 -3.0
2,808,428 + SGL_RS14955 0.71 -2.4
2,808,446 + SGL_RS14955 0.72 -3.4
2,808,454 - SGL_RS14955 0.72 -3.0
2,808,454 - SGL_RS14955 0.72 -4.7
2,808,639 + SGL_RS14955 0.83 -3.6
2,808,647 - SGL_RS14955 0.83 -3.9
2,808,694 + SGL_RS14955 0.86 -3.4
2,808,723 - SGL_RS14955 0.88 -3.3
2,808,768 - -2.1
2,808,836 + -3.5
2,808,844 - -2.9
2,808,889 - -2.1
2,808,972 + -0.2
2,808,972 + +0.2
2,808,972 + -0.5
2,808,980 - +0.6
2,809,032 + +0.1
2,809,053 + -0.2
2,809,085 + -0.1
2,809,101 - +1.0
2,809,274 + SGL_RS14960 0.29 -0.4
2,809,282 + SGL_RS14960 0.30 +0.9
2,809,370 + SGL_RS14960 0.42 +0.3
2,809,378 - SGL_RS14960 0.43 +0.7
2,809,405 - SGL_RS14960 0.47 -0.1
2,809,417 + SGL_RS14960 0.48 +0.7
2,809,425 - SGL_RS14960 0.49 +1.1
2,809,513 - SGL_RS14960 0.61 +3.0
2,809,541 - SGL_RS14960 0.65 -0.9
2,809,587 + SGL_RS14960 0.71 +0.6
2,809,795 - +0.4
2,809,854 + -1.2

Or see this region's nucleotide sequence