Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14950 and SGL_RS14955 are separated by 151 nucleotides SGL_RS14955 and SGL_RS14960 are separated by 122 nucleotides
SGL_RS14950: SGL_RS14950 - vitamin K epoxide reductase family protein, at 2,806,082 to 2,807,059
_RS14950
SGL_RS14955: SGL_RS14955 - diflavin flavoprotein, at 2,807,211 to 2,808,932
_RS14955
SGL_RS14960: SGL_RS14960 - PHP domain-containing protein, at 2,809,055 to 2,809,804
_RS14960
Position (kb)
2807
2808
2809 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2807.074 kb on + strand at 2807.109 kb on + strand at 2807.159 kb on - strand at 2807.246 kb on - strand at 2807.294 kb on + strand at 2807.308 kb on + strand at 2807.330 kb on + strand at 2807.572 kb on - strand, within SGL_RS14955 at 2807.596 kb on + strand, within SGL_RS14955 at 2807.958 kb on - strand, within SGL_RS14955 at 2807.997 kb on + strand, within SGL_RS14955 at 2807.997 kb on + strand, within SGL_RS14955 at 2808.033 kb on + strand, within SGL_RS14955 at 2808.087 kb on + strand, within SGL_RS14955 at 2808.213 kb on + strand, within SGL_RS14955 at 2808.376 kb on + strand, within SGL_RS14955 at 2808.428 kb on + strand, within SGL_RS14955 at 2808.428 kb on + strand, within SGL_RS14955 at 2808.446 kb on + strand, within SGL_RS14955 at 2808.454 kb on - strand, within SGL_RS14955 at 2808.454 kb on - strand, within SGL_RS14955 at 2808.639 kb on + strand, within SGL_RS14955 at 2808.647 kb on - strand, within SGL_RS14955 at 2808.694 kb on + strand, within SGL_RS14955 at 2808.723 kb on - strand, within SGL_RS14955 at 2808.768 kb on - strand at 2808.836 kb on + strand at 2808.844 kb on - strand at 2808.889 kb on - strand at 2808.972 kb on + strand at 2808.972 kb on + strand at 2808.972 kb on + strand at 2808.980 kb on - strand at 2809.032 kb on + strand at 2809.053 kb on + strand at 2809.085 kb on + strand at 2809.101 kb on - strand at 2809.274 kb on + strand, within SGL_RS14960 at 2809.282 kb on + strand, within SGL_RS14960 at 2809.370 kb on + strand, within SGL_RS14960 at 2809.378 kb on - strand, within SGL_RS14960 at 2809.405 kb on - strand, within SGL_RS14960 at 2809.417 kb on + strand, within SGL_RS14960 at 2809.425 kb on - strand, within SGL_RS14960 at 2809.513 kb on - strand, within SGL_RS14960 at 2809.541 kb on - strand, within SGL_RS14960 at 2809.587 kb on + strand, within SGL_RS14960 at 2809.795 kb on - strand at 2809.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,807,074 + -0.7 2,807,109 + -0.3 2,807,159 - +0.6 2,807,246 - -2.5 2,807,294 + -2.7 2,807,308 + -1.9 2,807,330 + -2.8 2,807,572 - SGL_RS14955 0.21 -3.9 2,807,596 + SGL_RS14955 0.22 -2.9 2,807,958 - SGL_RS14955 0.43 -2.2 2,807,997 + SGL_RS14955 0.46 -1.9 2,807,997 + SGL_RS14955 0.46 -3.1 2,808,033 + SGL_RS14955 0.48 -3.3 2,808,087 + SGL_RS14955 0.51 -2.5 2,808,213 + SGL_RS14955 0.58 -3.2 2,808,376 + SGL_RS14955 0.68 -2.3 2,808,428 + SGL_RS14955 0.71 -3.0 2,808,428 + SGL_RS14955 0.71 -2.4 2,808,446 + SGL_RS14955 0.72 -3.4 2,808,454 - SGL_RS14955 0.72 -3.0 2,808,454 - SGL_RS14955 0.72 -4.7 2,808,639 + SGL_RS14955 0.83 -3.6 2,808,647 - SGL_RS14955 0.83 -3.9 2,808,694 + SGL_RS14955 0.86 -3.4 2,808,723 - SGL_RS14955 0.88 -3.3 2,808,768 - -2.1 2,808,836 + -3.5 2,808,844 - -2.9 2,808,889 - -2.1 2,808,972 + -0.2 2,808,972 + +0.2 2,808,972 + -0.5 2,808,980 - +0.6 2,809,032 + +0.1 2,809,053 + -0.2 2,809,085 + -0.1 2,809,101 - +1.0 2,809,274 + SGL_RS14960 0.29 -0.4 2,809,282 + SGL_RS14960 0.30 +0.9 2,809,370 + SGL_RS14960 0.42 +0.3 2,809,378 - SGL_RS14960 0.43 +0.7 2,809,405 - SGL_RS14960 0.47 -0.1 2,809,417 + SGL_RS14960 0.48 +0.7 2,809,425 - SGL_RS14960 0.49 +1.1 2,809,513 - SGL_RS14960 0.61 +3.0 2,809,541 - SGL_RS14960 0.65 -0.9 2,809,587 + SGL_RS14960 0.71 +0.6 2,809,795 - +0.4 2,809,854 + -1.2
Or see this region's nucleotide sequence