Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14930 and SGL_RS14935 are separated by 19 nucleotides SGL_RS14935 and SGL_RS14940 are separated by 70 nucleotides SGL_RS14940 and SGL_RS19990 overlap by 85 nucleotides SGL_RS19990 and SGL_RS14950 are separated by 192 nucleotides
SGL_RS14930: SGL_RS14930 - type I methionyl aminopeptidase, at 2,803,366 to 2,804,208
_RS14930
SGL_RS14935: SGL_RS14935 - ferredoxin:thioredoxin reductase, at 2,804,228 to 2,804,584
_RS14935
SGL_RS14940: SGL_RS14940 - alpha/beta hydrolase, at 2,804,655 to 2,805,692
_RS14940
SGL_RS19990: SGL_RS19990 - SID1 transmembrane family member, at 2,805,608 to 2,805,889
_RS19990
SGL_RS14950: SGL_RS14950 - vitamin K epoxide reductase family protein, at 2,806,082 to 2,807,059
_RS14950
Position (kb)
2804
2805
2806 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2803.781 kb on + strand, within SGL_RS14930 at 2803.781 kb on + strand, within SGL_RS14930 at 2803.781 kb on + strand, within SGL_RS14930 at 2803.781 kb on + strand, within SGL_RS14930 at 2804.037 kb on - strand, within SGL_RS14930 at 2804.164 kb on + strand at 2804.171 kb on + strand at 2804.172 kb on - strand at 2804.641 kb on - strand at 2804.664 kb on - strand at 2804.811 kb on - strand, within SGL_RS14940 at 2804.906 kb on + strand, within SGL_RS14940 at 2804.950 kb on - strand, within SGL_RS14940 at 2805.171 kb on + strand, within SGL_RS14940 at 2805.179 kb on - strand, within SGL_RS14940 at 2805.179 kb on - strand, within SGL_RS14940 at 2805.274 kb on - strand, within SGL_RS14940 at 2805.310 kb on + strand, within SGL_RS14940 at 2805.463 kb on + strand, within SGL_RS14940 at 2805.466 kb on - strand, within SGL_RS14940 at 2805.471 kb on - strand, within SGL_RS14940 at 2805.821 kb on + strand, within SGL_RS19990 at 2805.829 kb on - strand, within SGL_RS19990 at 2805.842 kb on - strand, within SGL_RS19990 at 2805.987 kb on - strand at 2805.997 kb on - strand at 2806.010 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,803,781 + SGL_RS14930 0.49 -4.9 2,803,781 + SGL_RS14930 0.49 -3.2 2,803,781 + SGL_RS14930 0.49 -3.5 2,803,781 + SGL_RS14930 0.49 -4.6 2,804,037 - SGL_RS14930 0.80 -5.3 2,804,164 + -4.9 2,804,171 + -3.4 2,804,172 - -6.0 2,804,641 - -3.1 2,804,664 - -0.8 2,804,811 - SGL_RS14940 0.15 -0.0 2,804,906 + SGL_RS14940 0.24 -0.4 2,804,950 - SGL_RS14940 0.28 -0.5 2,805,171 + SGL_RS14940 0.50 -0.5 2,805,179 - SGL_RS14940 0.50 -0.3 2,805,179 - SGL_RS14940 0.50 +0.1 2,805,274 - SGL_RS14940 0.60 +0.1 2,805,310 + SGL_RS14940 0.63 +0.4 2,805,463 + SGL_RS14940 0.78 -1.0 2,805,466 - SGL_RS14940 0.78 +0.2 2,805,471 - SGL_RS14940 0.79 +0.1 2,805,821 + SGL_RS19990 0.76 -0.6 2,805,829 - SGL_RS19990 0.78 -0.6 2,805,842 - SGL_RS19990 0.83 -0.4 2,805,987 - +0.0 2,805,997 - +0.2 2,806,010 + -0.4
Or see this region's nucleotide sequence