Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14940

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14930 and SGL_RS14935 are separated by 19 nucleotidesSGL_RS14935 and SGL_RS14940 are separated by 70 nucleotidesSGL_RS14940 and SGL_RS19990 overlap by 85 nucleotidesSGL_RS19990 and SGL_RS14950 are separated by 192 nucleotides SGL_RS14930: SGL_RS14930 - type I methionyl aminopeptidase, at 2,803,366 to 2,804,208 _RS14930 SGL_RS14935: SGL_RS14935 - ferredoxin:thioredoxin reductase, at 2,804,228 to 2,804,584 _RS14935 SGL_RS14940: SGL_RS14940 - alpha/beta hydrolase, at 2,804,655 to 2,805,692 _RS14940 SGL_RS19990: SGL_RS19990 - SID1 transmembrane family member, at 2,805,608 to 2,805,889 _RS19990 SGL_RS14950: SGL_RS14950 - vitamin K epoxide reductase family protein, at 2,806,082 to 2,807,059 _RS14950 Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2803.781 kb on + strand, within SGL_RS14930at 2803.781 kb on + strand, within SGL_RS14930at 2803.781 kb on + strand, within SGL_RS14930at 2803.781 kb on + strand, within SGL_RS14930at 2804.037 kb on - strand, within SGL_RS14930at 2804.164 kb on + strandat 2804.171 kb on + strandat 2804.172 kb on - strandat 2804.641 kb on - strandat 2804.664 kb on - strandat 2804.811 kb on - strand, within SGL_RS14940at 2804.906 kb on + strand, within SGL_RS14940at 2804.950 kb on - strand, within SGL_RS14940at 2805.171 kb on + strand, within SGL_RS14940at 2805.179 kb on - strand, within SGL_RS14940at 2805.179 kb on - strand, within SGL_RS14940at 2805.274 kb on - strand, within SGL_RS14940at 2805.310 kb on + strand, within SGL_RS14940at 2805.463 kb on + strand, within SGL_RS14940at 2805.466 kb on - strand, within SGL_RS14940at 2805.471 kb on - strand, within SGL_RS14940at 2805.821 kb on + strand, within SGL_RS19990at 2805.829 kb on - strand, within SGL_RS19990at 2805.842 kb on - strand, within SGL_RS19990at 2805.987 kb on - strandat 2805.997 kb on - strandat 2806.010 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,803,781 + SGL_RS14930 0.49 -4.9
2,803,781 + SGL_RS14930 0.49 -3.2
2,803,781 + SGL_RS14930 0.49 -3.5
2,803,781 + SGL_RS14930 0.49 -4.6
2,804,037 - SGL_RS14930 0.80 -5.3
2,804,164 + -4.9
2,804,171 + -3.4
2,804,172 - -6.0
2,804,641 - -3.1
2,804,664 - -0.8
2,804,811 - SGL_RS14940 0.15 -0.0
2,804,906 + SGL_RS14940 0.24 -0.4
2,804,950 - SGL_RS14940 0.28 -0.5
2,805,171 + SGL_RS14940 0.50 -0.5
2,805,179 - SGL_RS14940 0.50 -0.3
2,805,179 - SGL_RS14940 0.50 +0.1
2,805,274 - SGL_RS14940 0.60 +0.1
2,805,310 + SGL_RS14940 0.63 +0.4
2,805,463 + SGL_RS14940 0.78 -1.0
2,805,466 - SGL_RS14940 0.78 +0.2
2,805,471 - SGL_RS14940 0.79 +0.1
2,805,821 + SGL_RS19990 0.76 -0.6
2,805,829 - SGL_RS19990 0.78 -0.6
2,805,842 - SGL_RS19990 0.83 -0.4
2,805,987 - +0.0
2,805,997 - +0.2
2,806,010 + -0.4

Or see this region's nucleotide sequence