Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14825

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14820 and SGL_RS14825 are separated by 563 nucleotidesSGL_RS14825 and SGL_RS14830 are separated by 369 nucleotides SGL_RS14820: SGL_RS14820 - magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase, at 2,777,447 to 2,778,946 _RS14820 SGL_RS14825: SGL_RS14825 - photosystem II chlorophyll-binding protein CP47, at 2,779,510 to 2,781,033 _RS14825 SGL_RS14830: SGL_RS14830 - FkbM family methyltransferase, at 2,781,403 to 2,784,447 _RS14830 Position (kb) 2779 2780 2781 2782Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2778.743 kb on + strand, within SGL_RS14820at 2778.798 kb on - strandat 2778.977 kb on + strandat 2779.166 kb on + strandat 2779.179 kb on - strandat 2779.257 kb on - strandat 2779.259 kb on + strandat 2779.281 kb on - strandat 2779.303 kb on + strandat 2779.311 kb on - strandat 2781.048 kb on + strandat 2781.056 kb on - strandat 2781.056 kb on - strandat 2781.061 kb on + strandat 2781.061 kb on + strandat 2781.061 kb on + strandat 2781.095 kb on + strandat 2781.691 kb on + strandat 2781.763 kb on + strand, within SGL_RS14830at 2781.775 kb on + strand, within SGL_RS14830at 2781.775 kb on + strand, within SGL_RS14830at 2781.783 kb on - strand, within SGL_RS14830at 2781.988 kb on + strand, within SGL_RS14830at 2781.996 kb on - strand, within SGL_RS14830

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,778,743 + SGL_RS14820 0.86 +0.3
2,778,798 - +0.3
2,778,977 + +0.7
2,779,166 + +0.0
2,779,179 - +0.4
2,779,257 - -0.2
2,779,259 + +0.6
2,779,281 - -0.7
2,779,303 + -0.5
2,779,311 - -0.6
2,781,048 + +1.0
2,781,056 - -2.2
2,781,056 - -2.6
2,781,061 + +0.7
2,781,061 + +1.9
2,781,061 + +1.1
2,781,095 + +2.4
2,781,691 + -5.6
2,781,763 + SGL_RS14830 0.12 -2.6
2,781,775 + SGL_RS14830 0.12 -3.3
2,781,775 + SGL_RS14830 0.12 -4.6
2,781,783 - SGL_RS14830 0.12 -3.6
2,781,988 + SGL_RS14830 0.19 -2.6
2,781,996 - SGL_RS14830 0.19 -4.0

Or see this region's nucleotide sequence