Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14660

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14655 and SGL_RS14660 are separated by 256 nucleotidesSGL_RS14660 and SGL_RS19480 are separated by 94 nucleotidesSGL_RS19480 and SGL_RS14665 are separated by 102 nucleotides SGL_RS14655: SGL_RS14655 - efflux RND transporter periplasmic adaptor subunit, at 2,739,149 to 2,740,654 _RS14655 SGL_RS14660: SGL_RS14660 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 2,740,911 to 2,741,327 _RS14660 SGL_RS19480: SGL_RS19480 - hypothetical protein, at 2,741,422 to 2,741,571 _RS19480 SGL_RS14665: SGL_RS14665 - glutamate--tRNA ligase, at 2,741,674 to 2,743,125 _RS14665 Position (kb) 2740 2741 2742Strain fitness (log2 ratio) -2 -1 0 1at 2739.962 kb on + strand, within SGL_RS14655at 2740.026 kb on + strand, within SGL_RS14655at 2740.081 kb on - strand, within SGL_RS14655at 2740.336 kb on - strand, within SGL_RS14655at 2740.397 kb on - strand, within SGL_RS14655at 2740.520 kb on - strandat 2740.551 kb on - strandat 2740.590 kb on + strandat 2740.590 kb on + strandat 2740.598 kb on - strandat 2740.620 kb on - strandat 2740.620 kb on - strandat 2740.863 kb on - strandat 2740.883 kb on - strandat 2740.997 kb on + strand, within SGL_RS14660at 2741.073 kb on + strand, within SGL_RS14660at 2741.079 kb on + strand, within SGL_RS14660at 2741.159 kb on + strand, within SGL_RS14660at 2741.321 kb on + strandat 2741.376 kb on - strandat 2741.402 kb on - strandat 2741.465 kb on - strand, within SGL_RS19480at 2741.679 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,739,962 + SGL_RS14655 0.54 +0.4
2,740,026 + SGL_RS14655 0.58 +0.2
2,740,081 - SGL_RS14655 0.62 +0.3
2,740,336 - SGL_RS14655 0.79 -0.6
2,740,397 - SGL_RS14655 0.83 -0.5
2,740,520 - +0.1
2,740,551 - -0.9
2,740,590 + +0.0
2,740,590 + +0.2
2,740,598 - +1.0
2,740,620 - -0.2
2,740,620 - -0.4
2,740,863 - +0.3
2,740,883 - +0.0
2,740,997 + SGL_RS14660 0.21 -1.1
2,741,073 + SGL_RS14660 0.39 -2.1
2,741,079 + SGL_RS14660 0.40 -0.9
2,741,159 + SGL_RS14660 0.59 +0.2
2,741,321 + +1.0
2,741,376 - +0.7
2,741,402 - +0.5
2,741,465 - SGL_RS19480 0.29 -0.5
2,741,679 - +0.0

Or see this region's nucleotide sequence