Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13625

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13615 and SGL_RS13620 are separated by 78 nucleotidesSGL_RS13620 and SGL_RS13625 are separated by 273 nucleotidesSGL_RS13625 and SGL_RS13630 are separated by 75 nucleotidesSGL_RS13630 and SGL_RS13635 are separated by 53 nucleotides SGL_RS13615: SGL_RS13615 - hypothetical protein, at 2,526,633 to 2,528,081 _RS13615 SGL_RS13620: SGL_RS13620 - Uma2 family endonuclease, at 2,528,160 to 2,528,735 _RS13620 SGL_RS13625: SGL_RS13625 - ATP-dependent zinc metalloprotease FtsH2, at 2,529,009 to 2,530,892 _RS13625 SGL_RS13630: SGL_RS13630 - LON peptidase substrate-binding domain-containing protein, at 2,530,968 to 2,531,612 _RS13630 SGL_RS13635: SGL_RS13635 - twin-arginine translocase subunit TatC, at 2,531,666 to 2,532,430 _RS13635 Position (kb) 2529 2530 2531Strain fitness (log2 ratio) -2 -1 0 1at 2528.138 kb on + strandat 2528.744 kb on + strandat 2528.745 kb on - strandat 2528.814 kb on - strandat 2529.329 kb on + strand, within SGL_RS13625at 2529.364 kb on - strand, within SGL_RS13625at 2529.459 kb on + strand, within SGL_RS13625at 2530.314 kb on + strand, within SGL_RS13625at 2530.534 kb on + strand, within SGL_RS13625at 2530.548 kb on - strand, within SGL_RS13625at 2530.965 kb on + strandat 2530.976 kb on - strandat 2531.287 kb on - strand, within SGL_RS13630at 2531.440 kb on + strand, within SGL_RS13630at 2531.440 kb on + strand, within SGL_RS13630at 2531.568 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
2,528,138 + -0.1
2,528,744 + -1.0
2,528,745 - -0.9
2,528,814 - +0.1
2,529,329 + SGL_RS13625 0.17 -1.7
2,529,364 - SGL_RS13625 0.19 -2.6
2,529,459 + SGL_RS13625 0.24 -2.2
2,530,314 + SGL_RS13625 0.69 -1.0
2,530,534 + SGL_RS13625 0.81 -1.7
2,530,548 - SGL_RS13625 0.82 -2.4
2,530,965 + -1.0
2,530,976 - +0.2
2,531,287 - SGL_RS13630 0.49 -1.9
2,531,440 + SGL_RS13630 0.73 -0.9
2,531,440 + SGL_RS13630 0.73 -0.5
2,531,568 - -0.7

Or see this region's nucleotide sequence