Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13615 and SGL_RS13620 are separated by 78 nucleotides SGL_RS13620 and SGL_RS13625 are separated by 273 nucleotides SGL_RS13625 and SGL_RS13630 are separated by 75 nucleotides SGL_RS13630 and SGL_RS13635 are separated by 53 nucleotides
SGL_RS13615: SGL_RS13615 - hypothetical protein, at 2,526,633 to 2,528,081
_RS13615
SGL_RS13620: SGL_RS13620 - Uma2 family endonuclease, at 2,528,160 to 2,528,735
_RS13620
SGL_RS13625: SGL_RS13625 - ATP-dependent zinc metalloprotease FtsH2, at 2,529,009 to 2,530,892
_RS13625
SGL_RS13630: SGL_RS13630 - LON peptidase substrate-binding domain-containing protein, at 2,530,968 to 2,531,612
_RS13630
SGL_RS13635: SGL_RS13635 - twin-arginine translocase subunit TatC, at 2,531,666 to 2,532,430
_RS13635
Position (kb)
2529
2530
2531 Strain fitness (log2 ratio)
-2
-1
0
1 at 2528.138 kb on + strand at 2528.744 kb on + strand at 2528.745 kb on - strand at 2528.814 kb on - strand at 2529.329 kb on + strand, within SGL_RS13625 at 2529.364 kb on - strand, within SGL_RS13625 at 2529.459 kb on + strand, within SGL_RS13625 at 2530.314 kb on + strand, within SGL_RS13625 at 2530.534 kb on + strand, within SGL_RS13625 at 2530.548 kb on - strand, within SGL_RS13625 at 2530.965 kb on + strand at 2530.976 kb on - strand at 2531.287 kb on - strand, within SGL_RS13630 at 2531.440 kb on + strand, within SGL_RS13630 at 2531.440 kb on + strand, within SGL_RS13630 at 2531.568 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,528,138 + -0.1 2,528,744 + -1.0 2,528,745 - -0.9 2,528,814 - +0.1 2,529,329 + SGL_RS13625 0.17 -1.7 2,529,364 - SGL_RS13625 0.19 -2.6 2,529,459 + SGL_RS13625 0.24 -2.2 2,530,314 + SGL_RS13625 0.69 -1.0 2,530,534 + SGL_RS13625 0.81 -1.7 2,530,548 - SGL_RS13625 0.82 -2.4 2,530,965 + -1.0 2,530,976 - +0.2 2,531,287 - SGL_RS13630 0.49 -1.9 2,531,440 + SGL_RS13630 0.73 -0.9 2,531,440 + SGL_RS13630 0.73 -0.5 2,531,568 - -0.7
Or see this region's nucleotide sequence