Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13460

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13455 and SGL_RS13460 are separated by 412 nucleotidesSGL_RS13460 and SGL_RS13465 are separated by 104 nucleotides SGL_RS13455: SGL_RS13455 - RDD family protein, at 2,485,646 to 2,486,194 _RS13455 SGL_RS13460: SGL_RS13460 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,486,607 to 2,487,923 _RS13460 SGL_RS13465: SGL_RS13465 - class II fumarate hydratase, at 2,488,028 to 2,489,428 _RS13465 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4at 2485.666 kb on - strandat 2485.682 kb on + strandat 2485.690 kb on - strandat 2485.690 kb on - strandat 2485.714 kb on - strand, within SGL_RS13455at 2485.832 kb on - strand, within SGL_RS13455at 2485.834 kb on + strand, within SGL_RS13455at 2485.957 kb on - strand, within SGL_RS13455at 2486.223 kb on + strandat 2486.310 kb on - strandat 2487.906 kb on - strandat 2488.059 kb on + strandat 2488.090 kb on + strandat 2488.445 kb on - strand, within SGL_RS13465at 2488.541 kb on - strand, within SGL_RS13465at 2488.541 kb on - strand, within SGL_RS13465at 2488.728 kb on + strand, within SGL_RS13465at 2488.735 kb on + strand, within SGL_RS13465at 2488.741 kb on - strand, within SGL_RS13465at 2488.741 kb on - strand, within SGL_RS13465

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,485,666 - +2.5
2,485,682 + +3.4
2,485,690 - +2.6
2,485,690 - +2.8
2,485,714 - SGL_RS13455 0.12 +2.0
2,485,832 - SGL_RS13455 0.34 +4.0
2,485,834 + SGL_RS13455 0.34 +3.2
2,485,957 - SGL_RS13455 0.57 +2.5
2,486,223 + -0.2
2,486,310 - +0.4
2,487,906 - -4.5
2,488,059 + -2.6
2,488,090 + -5.3
2,488,445 - SGL_RS13465 0.30 -6.8
2,488,541 - SGL_RS13465 0.37 -2.5
2,488,541 - SGL_RS13465 0.37 -4.2
2,488,728 + SGL_RS13465 0.50 -6.6
2,488,735 + SGL_RS13465 0.50 -6.0
2,488,741 - SGL_RS13465 0.51 -6.9
2,488,741 - SGL_RS13465 0.51 -4.1

Or see this region's nucleotide sequence