Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12905

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12900 and SGL_RS12905 are separated by 171 nucleotidesSGL_RS12905 and SGL_RS12910 are separated by 138 nucleotides SGL_RS12900: SGL_RS12900 - NAD-dependent succinate-semialdehyde dehydrogenase, at 2,369,282 to 2,370,646 _RS12900 SGL_RS12905: SGL_RS12905 - PAS domain-containing sensor histidine kinase, at 2,370,818 to 2,372,110 _RS12905 SGL_RS12910: SGL_RS12910 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,372,249 to 2,373,229 _RS12910 Position (kb) 2370 2371 2372 2373Strain fitness (log2 ratio) -3 -2 -1 0 1at 2369.828 kb on + strand, within SGL_RS12900at 2369.918 kb on + strand, within SGL_RS12900at 2370.013 kb on - strand, within SGL_RS12900at 2370.130 kb on - strand, within SGL_RS12900at 2370.193 kb on + strand, within SGL_RS12900at 2370.337 kb on - strand, within SGL_RS12900at 2370.611 kb on - strandat 2370.641 kb on + strandat 2370.681 kb on - strandat 2370.681 kb on - strandat 2370.952 kb on - strand, within SGL_RS12905at 2371.177 kb on + strand, within SGL_RS12905at 2371.278 kb on - strand, within SGL_RS12905at 2371.420 kb on - strand, within SGL_RS12905at 2371.524 kb on - strand, within SGL_RS12905at 2371.708 kb on - strand, within SGL_RS12905at 2371.709 kb on - strand, within SGL_RS12905at 2371.872 kb on + strand, within SGL_RS12905at 2372.366 kb on + strand, within SGL_RS12910

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,369,828 + SGL_RS12900 0.40 -0.3
2,369,918 + SGL_RS12900 0.47 -0.7
2,370,013 - SGL_RS12900 0.54 -1.2
2,370,130 - SGL_RS12900 0.62 -0.0
2,370,193 + SGL_RS12900 0.67 +0.1
2,370,337 - SGL_RS12900 0.77 -0.4
2,370,611 - -0.5
2,370,641 + +0.3
2,370,681 - +0.7
2,370,681 - +0.5
2,370,952 - SGL_RS12905 0.10 +1.2
2,371,177 + SGL_RS12905 0.28 -0.5
2,371,278 - SGL_RS12905 0.36 -2.1
2,371,420 - SGL_RS12905 0.47 -2.8
2,371,524 - SGL_RS12905 0.55 -1.6
2,371,708 - SGL_RS12905 0.69 -1.6
2,371,709 - SGL_RS12905 0.69 -1.6
2,371,872 + SGL_RS12905 0.82 -2.3
2,372,366 + SGL_RS12910 0.12 -2.0

Or see this region's nucleotide sequence