Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12595

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12585 and SGL_RS12590 are separated by 49 nucleotidesSGL_RS12590 and SGL_RS12595 are separated by 88 nucleotidesSGL_RS12595 and SGL_RS12600 are separated by 13 nucleotidesSGL_RS12600 and SGL_RS12605 are separated by 115 nucleotides SGL_RS12585: SGL_RS12585 - ABC transporter permease subunit, at 2,281,509 to 2,283,182 _RS12585 SGL_RS12590: SGL_RS12590 - low molecular weight protein-tyrosine-phosphatase, at 2,283,232 to 2,283,705 _RS12590 SGL_RS12595: SGL_RS12595 - ROK family protein, at 2,283,794 to 2,284,777 _RS12595 SGL_RS12600: SGL_RS12600 - DUF2062 domain-containing protein, at 2,284,791 to 2,285,294 _RS12600 SGL_RS12605: SGL_RS12605 - NYN domain-containing protein, at 2,285,410 to 2,285,997 _RS12605 Position (kb) 2283 2284 2285Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 2282.932 kb on - strand, within SGL_RS12585at 2282.942 kb on - strand, within SGL_RS12585at 2283.606 kb on + strand, within SGL_RS12590at 2283.621 kb on + strand, within SGL_RS12590at 2283.629 kb on - strand, within SGL_RS12590at 2283.808 kb on + strandat 2283.870 kb on + strandat 2283.994 kb on - strand, within SGL_RS12595at 2284.018 kb on - strand, within SGL_RS12595at 2284.089 kb on + strand, within SGL_RS12595at 2284.281 kb on - strand, within SGL_RS12595at 2284.324 kb on + strand, within SGL_RS12595at 2284.422 kb on - strand, within SGL_RS12595at 2284.570 kb on - strand, within SGL_RS12595at 2284.845 kb on + strand, within SGL_RS12600at 2285.104 kb on - strand, within SGL_RS12600at 2285.178 kb on - strand, within SGL_RS12600at 2285.279 kb on - strandat 2285.465 kb on - strandat 2285.498 kb on + strand, within SGL_RS12605at 2285.506 kb on - strand, within SGL_RS12605at 2285.549 kb on - strand, within SGL_RS12605at 2285.570 kb on - strand, within SGL_RS12605at 2285.690 kb on - strand, within SGL_RS12605

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,282,932 - SGL_RS12585 0.85 -2.6
2,282,942 - SGL_RS12585 0.86 -2.0
2,283,606 + SGL_RS12590 0.79 +1.2
2,283,621 + SGL_RS12590 0.82 +0.4
2,283,629 - SGL_RS12590 0.84 -0.4
2,283,808 + +0.5
2,283,870 + -3.2
2,283,994 - SGL_RS12595 0.20 -2.7
2,284,018 - SGL_RS12595 0.23 -6.8
2,284,089 + SGL_RS12595 0.30 -6.8
2,284,281 - SGL_RS12595 0.49 -6.7
2,284,324 + SGL_RS12595 0.54 -5.9
2,284,422 - SGL_RS12595 0.64 -5.9
2,284,570 - SGL_RS12595 0.79 -5.3
2,284,845 + SGL_RS12600 0.11 -0.1
2,285,104 - SGL_RS12600 0.62 -0.2
2,285,178 - SGL_RS12600 0.77 +1.4
2,285,279 - +1.5
2,285,465 - -2.3
2,285,498 + SGL_RS12605 0.15 -1.4
2,285,506 - SGL_RS12605 0.16 -1.6
2,285,549 - SGL_RS12605 0.24 -2.0
2,285,570 - SGL_RS12605 0.27 -1.2
2,285,690 - SGL_RS12605 0.48 -1.8

Or see this region's nucleotide sequence