Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12585 and SGL_RS12590 are separated by 49 nucleotides SGL_RS12590 and SGL_RS12595 are separated by 88 nucleotides SGL_RS12595 and SGL_RS12600 are separated by 13 nucleotides SGL_RS12600 and SGL_RS12605 are separated by 115 nucleotides
SGL_RS12585: SGL_RS12585 - ABC transporter permease subunit, at 2,281,509 to 2,283,182
_RS12585
SGL_RS12590: SGL_RS12590 - low molecular weight protein-tyrosine-phosphatase, at 2,283,232 to 2,283,705
_RS12590
SGL_RS12595: SGL_RS12595 - ROK family protein, at 2,283,794 to 2,284,777
_RS12595
SGL_RS12600: SGL_RS12600 - DUF2062 domain-containing protein, at 2,284,791 to 2,285,294
_RS12600
SGL_RS12605: SGL_RS12605 - NYN domain-containing protein, at 2,285,410 to 2,285,997
_RS12605
Position (kb)
2283
2284
2285 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 2282.932 kb on - strand, within SGL_RS12585 at 2282.942 kb on - strand, within SGL_RS12585 at 2283.606 kb on + strand, within SGL_RS12590 at 2283.621 kb on + strand, within SGL_RS12590 at 2283.629 kb on - strand, within SGL_RS12590 at 2283.808 kb on + strand at 2283.870 kb on + strand at 2283.994 kb on - strand, within SGL_RS12595 at 2284.018 kb on - strand, within SGL_RS12595 at 2284.089 kb on + strand, within SGL_RS12595 at 2284.281 kb on - strand, within SGL_RS12595 at 2284.324 kb on + strand, within SGL_RS12595 at 2284.422 kb on - strand, within SGL_RS12595 at 2284.570 kb on - strand, within SGL_RS12595 at 2284.845 kb on + strand, within SGL_RS12600 at 2285.104 kb on - strand, within SGL_RS12600 at 2285.178 kb on - strand, within SGL_RS12600 at 2285.279 kb on - strand at 2285.465 kb on - strand at 2285.498 kb on + strand, within SGL_RS12605 at 2285.506 kb on - strand, within SGL_RS12605 at 2285.549 kb on - strand, within SGL_RS12605 at 2285.570 kb on - strand, within SGL_RS12605 at 2285.690 kb on - strand, within SGL_RS12605
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,282,932 - SGL_RS12585 0.85 -2.6 2,282,942 - SGL_RS12585 0.86 -2.0 2,283,606 + SGL_RS12590 0.79 +1.2 2,283,621 + SGL_RS12590 0.82 +0.4 2,283,629 - SGL_RS12590 0.84 -0.4 2,283,808 + +0.5 2,283,870 + -3.2 2,283,994 - SGL_RS12595 0.20 -2.7 2,284,018 - SGL_RS12595 0.23 -6.8 2,284,089 + SGL_RS12595 0.30 -6.8 2,284,281 - SGL_RS12595 0.49 -6.7 2,284,324 + SGL_RS12595 0.54 -5.9 2,284,422 - SGL_RS12595 0.64 -5.9 2,284,570 - SGL_RS12595 0.79 -5.3 2,284,845 + SGL_RS12600 0.11 -0.1 2,285,104 - SGL_RS12600 0.62 -0.2 2,285,178 - SGL_RS12600 0.77 +1.4 2,285,279 - +1.5 2,285,465 - -2.3 2,285,498 + SGL_RS12605 0.15 -1.4 2,285,506 - SGL_RS12605 0.16 -1.6 2,285,549 - SGL_RS12605 0.24 -2.0 2,285,570 - SGL_RS12605 0.27 -1.2 2,285,690 - SGL_RS12605 0.48 -1.8
Or see this region's nucleotide sequence