Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12525

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12510 and SGL_RS12515 overlap by 20 nucleotidesSGL_RS12515 and SGL_RS12520 are separated by 200 nucleotidesSGL_RS12520 and SGL_RS12525 are separated by 159 nucleotidesSGL_RS12525 and SGL_RS12530 are separated by 203 nucleotidesSGL_RS12530 and SGL_RS12535 are separated by 145 nucleotides SGL_RS12510: SGL_RS12510 - lipoyl(octanoyl) transferase LipB, at 2,263,827 to 2,264,510 _RS12510 SGL_RS12515: SGL_RS12515 - hypothetical protein, at 2,264,491 to 2,264,781 _RS12515 SGL_RS12520: SGL_RS12520 - tRNA-Lys, at 2,264,982 to 2,265,053 _RS12520 SGL_RS12525: SGL_RS12525 - glycogen synthase GlgA, at 2,265,213 to 2,266,646 _RS12525 SGL_RS12530: SGL_RS12530 - DUF1830 domain-containing protein, at 2,266,850 to 2,267,344 _RS12530 SGL_RS12535: SGL_RS12535 - radical SAM protein, at 2,267,490 to 2,269,085 _RS12535 Position (kb) 2265 2266 2267Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 2264.518 kb on + strandat 2264.540 kb on + strand, within SGL_RS12515at 2264.801 kb on + strandat 2264.903 kb on - strandat 2264.920 kb on - strandat 2265.181 kb on - strandat 2265.251 kb on + strandat 2265.311 kb on - strandat 2265.324 kb on - strandat 2265.394 kb on + strand, within SGL_RS12525at 2265.523 kb on + strand, within SGL_RS12525at 2265.548 kb on - strand, within SGL_RS12525at 2265.642 kb on + strand, within SGL_RS12525at 2265.713 kb on + strand, within SGL_RS12525at 2265.812 kb on + strand, within SGL_RS12525at 2266.013 kb on + strand, within SGL_RS12525at 2266.060 kb on - strand, within SGL_RS12525at 2266.172 kb on + strand, within SGL_RS12525at 2266.186 kb on + strand, within SGL_RS12525at 2266.232 kb on + strand, within SGL_RS12525at 2266.310 kb on - strand, within SGL_RS12525at 2266.447 kb on - strand, within SGL_RS12525at 2266.521 kb on + strandat 2266.540 kb on + strandat 2266.594 kb on + strandat 2266.792 kb on + strandat 2266.800 kb on - strandat 2266.897 kb on + strandat 2266.941 kb on + strand, within SGL_RS12530at 2267.036 kb on + strand, within SGL_RS12530at 2267.054 kb on + strand, within SGL_RS12530at 2267.467 kb on + strandat 2267.469 kb on + strandat 2267.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,264,518 + -1.3
2,264,540 + SGL_RS12515 0.17 +1.0
2,264,801 + -2.6
2,264,903 - +0.1
2,264,920 - +0.4
2,265,181 - +0.5
2,265,251 + -0.9
2,265,311 - +2.6
2,265,324 - -1.5
2,265,394 + SGL_RS12525 0.13 -1.9
2,265,523 + SGL_RS12525 0.22 -0.9
2,265,548 - SGL_RS12525 0.23 -0.6
2,265,642 + SGL_RS12525 0.30 -1.2
2,265,713 + SGL_RS12525 0.35 -0.4
2,265,812 + SGL_RS12525 0.42 -0.8
2,266,013 + SGL_RS12525 0.56 -0.8
2,266,060 - SGL_RS12525 0.59 -0.3
2,266,172 + SGL_RS12525 0.67 -0.4
2,266,186 + SGL_RS12525 0.68 +0.9
2,266,232 + SGL_RS12525 0.71 -0.0
2,266,310 - SGL_RS12525 0.76 -1.0
2,266,447 - SGL_RS12525 0.86 -1.5
2,266,521 + -0.6
2,266,540 + +0.5
2,266,594 + -2.3
2,266,792 + +0.1
2,266,800 - +0.3
2,266,897 + -0.3
2,266,941 + SGL_RS12530 0.18 +0.6
2,267,036 + SGL_RS12530 0.38 +0.1
2,267,054 + SGL_RS12530 0.41 +0.0
2,267,467 + -5.4
2,267,469 + -6.2
2,267,489 - -6.9

Or see this region's nucleotide sequence