Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12445

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12440 and SGL_RS12445 are separated by 235 nucleotidesSGL_RS12445 and SGL_RS12450 are separated by 94 nucleotides SGL_RS12440: SGL_RS12440 - glycosyltransferase, at 2,245,636 to 2,246,631 _RS12440 SGL_RS12445: SGL_RS12445 - alpha/beta hydrolase, at 2,246,867 to 2,248,483 _RS12445 SGL_RS12450: SGL_RS12450 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,248,578 to 2,250,176 _RS12450 Position (kb) 2246 2247 2248 2249Strain fitness (log2 ratio) -3 -2 -1 0 1at 2246.031 kb on - strand, within SGL_RS12440at 2246.240 kb on + strand, within SGL_RS12440at 2246.301 kb on + strand, within SGL_RS12440at 2246.332 kb on + strand, within SGL_RS12440at 2247.578 kb on - strand, within SGL_RS12445at 2247.580 kb on - strand, within SGL_RS12445at 2247.707 kb on + strand, within SGL_RS12445at 2247.769 kb on - strand, within SGL_RS12445at 2247.785 kb on - strand, within SGL_RS12445at 2247.899 kb on + strand, within SGL_RS12445at 2247.940 kb on + strand, within SGL_RS12445at 2247.971 kb on + strand, within SGL_RS12445at 2247.971 kb on + strand, within SGL_RS12445at 2247.995 kb on - strand, within SGL_RS12445at 2248.014 kb on + strand, within SGL_RS12445at 2248.238 kb on - strand, within SGL_RS12445at 2248.291 kb on + strand, within SGL_RS12445at 2248.298 kb on + strand, within SGL_RS12445at 2248.472 kb on - strandat 2248.498 kb on - strandat 2248.551 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,246,031 - SGL_RS12440 0.40 -2.4
2,246,240 + SGL_RS12440 0.61 -3.3
2,246,301 + SGL_RS12440 0.67 -2.0
2,246,332 + SGL_RS12440 0.70 -1.7
2,247,578 - SGL_RS12445 0.44 -0.5
2,247,580 - SGL_RS12445 0.44 -0.7
2,247,707 + SGL_RS12445 0.52 +0.7
2,247,769 - SGL_RS12445 0.56 +0.7
2,247,785 - SGL_RS12445 0.57 +0.2
2,247,899 + SGL_RS12445 0.64 -1.1
2,247,940 + SGL_RS12445 0.66 -0.6
2,247,971 + SGL_RS12445 0.68 -1.6
2,247,971 + SGL_RS12445 0.68 +0.1
2,247,995 - SGL_RS12445 0.70 -0.0
2,248,014 + SGL_RS12445 0.71 +1.3
2,248,238 - SGL_RS12445 0.85 -0.1
2,248,291 + SGL_RS12445 0.88 -0.2
2,248,298 + SGL_RS12445 0.88 -0.1
2,248,472 - +0.4
2,248,498 - -1.6
2,248,551 + -3.6

Or see this region's nucleotide sequence