Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12010 and SGL_RS12015 are separated by 171 nucleotides SGL_RS12015 and SGL_RS12020 are separated by 219 nucleotides
SGL_RS12010: SGL_RS12010 - DUF3038 domain-containing protein, at 2,146,801 to 2,147,376
_RS12010
SGL_RS12015: SGL_RS12015 - hypothetical protein, at 2,147,548 to 2,148,033
_RS12015
SGL_RS12020: SGL_RS12020 - NAD(P)H-binding protein, at 2,148,253 to 2,149,233
_RS12020
Position (kb)
2147
2148
2149 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2146.683 kb on + strand at 2146.781 kb on + strand at 2146.797 kb on - strand at 2146.832 kb on + strand at 2146.842 kb on + strand at 2146.850 kb on - strand at 2147.347 kb on + strand at 2147.350 kb on - strand at 2147.355 kb on - strand at 2147.575 kb on - strand at 2147.653 kb on + strand, within SGL_RS12015 at 2147.679 kb on + strand, within SGL_RS12015 at 2147.688 kb on - strand, within SGL_RS12015 at 2147.688 kb on - strand, within SGL_RS12015 at 2147.799 kb on + strand, within SGL_RS12015 at 2147.885 kb on + strand, within SGL_RS12015 at 2147.994 kb on + strand at 2148.113 kb on - strand at 2148.113 kb on - strand at 2148.114 kb on - strand at 2148.121 kb on + strand at 2148.156 kb on - strand at 2148.762 kb on + strand, within SGL_RS12020 at 2148.823 kb on + strand, within SGL_RS12020 at 2148.823 kb on + strand, within SGL_RS12020 at 2148.823 kb on + strand, within SGL_RS12020 at 2148.831 kb on - strand, within SGL_RS12020 at 2148.831 kb on - strand, within SGL_RS12020 at 2148.841 kb on - strand, within SGL_RS12020 at 2148.851 kb on + strand, within SGL_RS12020 at 2148.859 kb on - strand, within SGL_RS12020
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,146,683 + +3.5 2,146,781 + +0.9 2,146,797 - +0.7 2,146,832 + -1.1 2,146,842 + +0.4 2,146,850 - +0.1 2,147,347 + -1.3 2,147,350 - +0.6 2,147,355 - +0.7 2,147,575 - -1.6 2,147,653 + SGL_RS12015 0.22 -1.0 2,147,679 + SGL_RS12015 0.27 -1.2 2,147,688 - SGL_RS12015 0.29 -1.6 2,147,688 - SGL_RS12015 0.29 -0.8 2,147,799 + SGL_RS12015 0.52 -1.7 2,147,885 + SGL_RS12015 0.69 -1.6 2,147,994 + -0.6 2,148,113 - -0.4 2,148,113 - +0.8 2,148,114 - -0.6 2,148,121 + +0.7 2,148,156 - -0.5 2,148,762 + SGL_RS12020 0.52 -0.6 2,148,823 + SGL_RS12020 0.58 -0.1 2,148,823 + SGL_RS12020 0.58 -1.1 2,148,823 + SGL_RS12020 0.58 -0.5 2,148,831 - SGL_RS12020 0.59 -0.1 2,148,831 - SGL_RS12020 0.59 -1.1 2,148,841 - SGL_RS12020 0.60 -1.5 2,148,851 + SGL_RS12020 0.61 -0.5 2,148,859 - SGL_RS12020 0.62 -0.8
Or see this region's nucleotide sequence