Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12015

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12010 and SGL_RS12015 are separated by 171 nucleotidesSGL_RS12015 and SGL_RS12020 are separated by 219 nucleotides SGL_RS12010: SGL_RS12010 - DUF3038 domain-containing protein, at 2,146,801 to 2,147,376 _RS12010 SGL_RS12015: SGL_RS12015 - hypothetical protein, at 2,147,548 to 2,148,033 _RS12015 SGL_RS12020: SGL_RS12020 - NAD(P)H-binding protein, at 2,148,253 to 2,149,233 _RS12020 Position (kb) 2147 2148 2149Strain fitness (log2 ratio) -1 0 1 2 3at 2146.683 kb on + strandat 2146.781 kb on + strandat 2146.797 kb on - strandat 2146.832 kb on + strandat 2146.842 kb on + strandat 2146.850 kb on - strandat 2147.347 kb on + strandat 2147.350 kb on - strandat 2147.355 kb on - strandat 2147.575 kb on - strandat 2147.653 kb on + strand, within SGL_RS12015at 2147.679 kb on + strand, within SGL_RS12015at 2147.688 kb on - strand, within SGL_RS12015at 2147.688 kb on - strand, within SGL_RS12015at 2147.799 kb on + strand, within SGL_RS12015at 2147.885 kb on + strand, within SGL_RS12015at 2147.994 kb on + strandat 2148.113 kb on - strandat 2148.113 kb on - strandat 2148.114 kb on - strandat 2148.121 kb on + strandat 2148.156 kb on - strandat 2148.762 kb on + strand, within SGL_RS12020at 2148.823 kb on + strand, within SGL_RS12020at 2148.823 kb on + strand, within SGL_RS12020at 2148.823 kb on + strand, within SGL_RS12020at 2148.831 kb on - strand, within SGL_RS12020at 2148.831 kb on - strand, within SGL_RS12020at 2148.841 kb on - strand, within SGL_RS12020at 2148.851 kb on + strand, within SGL_RS12020at 2148.859 kb on - strand, within SGL_RS12020

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,146,683 + +3.5
2,146,781 + +0.9
2,146,797 - +0.7
2,146,832 + -1.1
2,146,842 + +0.4
2,146,850 - +0.1
2,147,347 + -1.3
2,147,350 - +0.6
2,147,355 - +0.7
2,147,575 - -1.6
2,147,653 + SGL_RS12015 0.22 -1.0
2,147,679 + SGL_RS12015 0.27 -1.2
2,147,688 - SGL_RS12015 0.29 -1.6
2,147,688 - SGL_RS12015 0.29 -0.8
2,147,799 + SGL_RS12015 0.52 -1.7
2,147,885 + SGL_RS12015 0.69 -1.6
2,147,994 + -0.6
2,148,113 - -0.4
2,148,113 - +0.8
2,148,114 - -0.6
2,148,121 + +0.7
2,148,156 - -0.5
2,148,762 + SGL_RS12020 0.52 -0.6
2,148,823 + SGL_RS12020 0.58 -0.1
2,148,823 + SGL_RS12020 0.58 -1.1
2,148,823 + SGL_RS12020 0.58 -0.5
2,148,831 - SGL_RS12020 0.59 -0.1
2,148,831 - SGL_RS12020 0.59 -1.1
2,148,841 - SGL_RS12020 0.60 -1.5
2,148,851 + SGL_RS12020 0.61 -0.5
2,148,859 - SGL_RS12020 0.62 -0.8

Or see this region's nucleotide sequence