Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11925 and SGL_RS11930 are separated by 163 nucleotides SGL_RS11930 and SGL_RS11935 are separated by 76 nucleotides SGL_RS11935 and SGL_RS11940 are separated by 158 nucleotides SGL_RS11940 and SGL_RS11945 are separated by 257 nucleotides
SGL_RS11925: SGL_RS11925 - glutamine synthetase III, at 2,128,767 to 2,130,941
_RS11925
SGL_RS11930: SGL_RS11930 - DUF29 domain-containing protein, at 2,131,105 to 2,131,539
_RS11930
SGL_RS11935: SGL_RS11935 - photosystem II cytochrome c-550, at 2,131,616 to 2,132,098
_RS11935
SGL_RS11940: SGL_RS11940 - hypothetical protein, at 2,132,257 to 2,132,457
_RS11940
SGL_RS11945: SGL_RS11945 - sirohydrochlorin chelatase, at 2,132,715 to 2,133,545
_RS11945
Position (kb)
2131
2132
2133 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 2130.799 kb on - strand at 2130.896 kb on + strand at 2131.150 kb on - strand, within SGL_RS11930 at 2132.377 kb on + strand, within SGL_RS11940 at 2132.608 kb on + strand at 2132.655 kb on + strand at 2132.663 kb on - strand at 2132.786 kb on + strand at 2132.799 kb on + strand, within SGL_RS11945 at 2132.957 kb on + strand, within SGL_RS11945 at 2132.963 kb on + strand, within SGL_RS11945 at 2132.963 kb on + strand, within SGL_RS11945 at 2132.971 kb on - strand, within SGL_RS11945 at 2132.984 kb on + strand, within SGL_RS11945 at 2133.053 kb on + strand, within SGL_RS11945 at 2133.061 kb on - strand, within SGL_RS11945 at 2133.086 kb on - strand, within SGL_RS11945 at 2133.096 kb on + strand, within SGL_RS11945
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,130,799 - -0.1 2,130,896 + +0.1 2,131,150 - SGL_RS11930 0.10 +0.7 2,132,377 + SGL_RS11940 0.60 -3.1 2,132,608 + +0.4 2,132,655 + +0.5 2,132,663 - -0.2 2,132,786 + -5.3 2,132,799 + SGL_RS11945 0.10 -5.4 2,132,957 + SGL_RS11945 0.29 -3.8 2,132,963 + SGL_RS11945 0.30 -4.8 2,132,963 + SGL_RS11945 0.30 -3.1 2,132,971 - SGL_RS11945 0.31 -5.9 2,132,984 + SGL_RS11945 0.32 -1.6 2,133,053 + SGL_RS11945 0.41 -4.1 2,133,061 - SGL_RS11945 0.42 -5.0 2,133,086 - SGL_RS11945 0.45 -5.2 2,133,096 + SGL_RS11945 0.46 -3.3
Or see this region's nucleotide sequence