Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11935

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11925 and SGL_RS11930 are separated by 163 nucleotidesSGL_RS11930 and SGL_RS11935 are separated by 76 nucleotidesSGL_RS11935 and SGL_RS11940 are separated by 158 nucleotidesSGL_RS11940 and SGL_RS11945 are separated by 257 nucleotides SGL_RS11925: SGL_RS11925 - glutamine synthetase III, at 2,128,767 to 2,130,941 _RS11925 SGL_RS11930: SGL_RS11930 - DUF29 domain-containing protein, at 2,131,105 to 2,131,539 _RS11930 SGL_RS11935: SGL_RS11935 - photosystem II cytochrome c-550, at 2,131,616 to 2,132,098 _RS11935 SGL_RS11940: SGL_RS11940 - hypothetical protein, at 2,132,257 to 2,132,457 _RS11940 SGL_RS11945: SGL_RS11945 - sirohydrochlorin chelatase, at 2,132,715 to 2,133,545 _RS11945 Position (kb) 2131 2132 2133Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2130.799 kb on - strandat 2130.896 kb on + strandat 2131.150 kb on - strand, within SGL_RS11930at 2132.377 kb on + strand, within SGL_RS11940at 2132.608 kb on + strandat 2132.655 kb on + strandat 2132.663 kb on - strandat 2132.786 kb on + strandat 2132.799 kb on + strand, within SGL_RS11945at 2132.957 kb on + strand, within SGL_RS11945at 2132.963 kb on + strand, within SGL_RS11945at 2132.963 kb on + strand, within SGL_RS11945at 2132.971 kb on - strand, within SGL_RS11945at 2132.984 kb on + strand, within SGL_RS11945at 2133.053 kb on + strand, within SGL_RS11945at 2133.061 kb on - strand, within SGL_RS11945at 2133.086 kb on - strand, within SGL_RS11945at 2133.096 kb on + strand, within SGL_RS11945

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,130,799 - -0.1
2,130,896 + +0.1
2,131,150 - SGL_RS11930 0.10 +0.7
2,132,377 + SGL_RS11940 0.60 -3.1
2,132,608 + +0.4
2,132,655 + +0.5
2,132,663 - -0.2
2,132,786 + -5.3
2,132,799 + SGL_RS11945 0.10 -5.4
2,132,957 + SGL_RS11945 0.29 -3.8
2,132,963 + SGL_RS11945 0.30 -4.8
2,132,963 + SGL_RS11945 0.30 -3.1
2,132,971 - SGL_RS11945 0.31 -5.9
2,132,984 + SGL_RS11945 0.32 -1.6
2,133,053 + SGL_RS11945 0.41 -4.1
2,133,061 - SGL_RS11945 0.42 -5.0
2,133,086 - SGL_RS11945 0.45 -5.2
2,133,096 + SGL_RS11945 0.46 -3.3

Or see this region's nucleotide sequence