Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11720 and SGL_RS11725 are separated by 27 nucleotides SGL_RS11725 and SGL_RS11730 are separated by 141 nucleotides SGL_RS11730 and SGL_RS18935 overlap by 4 nucleotides SGL_RS18935 and SGL_RS11735 are separated by 93 nucleotides SGL_RS11735 and SGL_RS11740 are separated by 277 nucleotides SGL_RS11740 and SGL_RS11745 are separated by 70 nucleotides
SGL_RS11720: SGL_RS11720 - hypothetical protein, at 2,085,211 to 2,085,417
_RS11720
SGL_RS11725: SGL_RS11725 - hypothetical protein, at 2,085,445 to 2,085,684
_RS11725
SGL_RS11730: SGL_RS11730 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 2,085,826 to 2,086,110
_RS11730
SGL_RS18935: SGL_RS18935 - type II toxin-antitoxin system YoeB family toxin, at 2,086,107 to 2,086,211
_RS18935
SGL_RS11735: SGL_RS11735 - photosystem II manganese-stabilizing polypeptide, at 2,086,305 to 2,087,129
_RS11735
SGL_RS11740: SGL_RS11740 - hypothetical protein, at 2,087,407 to 2,087,733
_RS11740
SGL_RS11745: SGL_RS11745 - tRNA-Gln, at 2,087,804 to 2,087,875
_RS11745
Position (kb)
2086
2087
2088 Strain fitness (log2 ratio)
-1
0
1 at 2085.458 kb on + strand at 2085.581 kb on + strand, within SGL_RS11725 at 2085.715 kb on - strand at 2086.099 kb on + strand at 2087.339 kb on - strand at 2087.518 kb on + strand, within SGL_RS11740 at 2087.535 kb on - strand, within SGL_RS11740 at 2087.537 kb on - strand, within SGL_RS11740 at 2087.596 kb on + strand, within SGL_RS11740 at 2087.648 kb on - strand, within SGL_RS11740 at 2087.980 kb on + strand at 2087.982 kb on + strand at 2087.987 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,085,458 + +0.4 2,085,581 + SGL_RS11725 0.57 +0.1 2,085,715 - +0.2 2,086,099 + +0.3 2,087,339 - +0.4 2,087,518 + SGL_RS11740 0.34 -0.3 2,087,535 - SGL_RS11740 0.39 +0.4 2,087,537 - SGL_RS11740 0.40 +0.9 2,087,596 + SGL_RS11740 0.58 +1.0 2,087,648 - SGL_RS11740 0.74 -0.7 2,087,980 + +0.8 2,087,982 + +0.7 2,087,987 + +0.8
Or see this region's nucleotide sequence