Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11735

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11720 and SGL_RS11725 are separated by 27 nucleotidesSGL_RS11725 and SGL_RS11730 are separated by 141 nucleotidesSGL_RS11730 and SGL_RS18935 overlap by 4 nucleotidesSGL_RS18935 and SGL_RS11735 are separated by 93 nucleotidesSGL_RS11735 and SGL_RS11740 are separated by 277 nucleotidesSGL_RS11740 and SGL_RS11745 are separated by 70 nucleotides SGL_RS11720: SGL_RS11720 - hypothetical protein, at 2,085,211 to 2,085,417 _RS11720 SGL_RS11725: SGL_RS11725 - hypothetical protein, at 2,085,445 to 2,085,684 _RS11725 SGL_RS11730: SGL_RS11730 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 2,085,826 to 2,086,110 _RS11730 SGL_RS18935: SGL_RS18935 - type II toxin-antitoxin system YoeB family toxin, at 2,086,107 to 2,086,211 _RS18935 SGL_RS11735: SGL_RS11735 - photosystem II manganese-stabilizing polypeptide, at 2,086,305 to 2,087,129 _RS11735 SGL_RS11740: SGL_RS11740 - hypothetical protein, at 2,087,407 to 2,087,733 _RS11740 SGL_RS11745: SGL_RS11745 - tRNA-Gln, at 2,087,804 to 2,087,875 _RS11745 Position (kb) 2086 2087 2088Strain fitness (log2 ratio) -1 0 1at 2085.458 kb on + strandat 2085.581 kb on + strand, within SGL_RS11725at 2085.715 kb on - strandat 2086.099 kb on + strandat 2087.339 kb on - strandat 2087.518 kb on + strand, within SGL_RS11740at 2087.535 kb on - strand, within SGL_RS11740at 2087.537 kb on - strand, within SGL_RS11740at 2087.596 kb on + strand, within SGL_RS11740at 2087.648 kb on - strand, within SGL_RS11740at 2087.980 kb on + strandat 2087.982 kb on + strandat 2087.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,085,458 + +0.4
2,085,581 + SGL_RS11725 0.57 +0.1
2,085,715 - +0.2
2,086,099 + +0.3
2,087,339 - +0.4
2,087,518 + SGL_RS11740 0.34 -0.3
2,087,535 - SGL_RS11740 0.39 +0.4
2,087,537 - SGL_RS11740 0.40 +0.9
2,087,596 + SGL_RS11740 0.58 +1.0
2,087,648 - SGL_RS11740 0.74 -0.7
2,087,980 + +0.8
2,087,982 + +0.7
2,087,987 + +0.8

Or see this region's nucleotide sequence