Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11630

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11625 and SGL_RS11630 are separated by 522 nucleotidesSGL_RS11630 and SGL_RS11635 are separated by 91 nucleotides SGL_RS11625: SGL_RS11625 - phosphoribulokinase, at 2,066,001 to 2,066,999 _RS11625 SGL_RS11630: SGL_RS11630 - phycobilisome linker polypeptide, at 2,067,522 to 2,068,763 _RS11630 SGL_RS11635: SGL_RS11635 - HAD family hydrolase, at 2,068,855 to 2,069,694 _RS11635 Position (kb) 2067 2068 2069Strain fitness (log2 ratio) -3 -2 -1 0 1at 2067.210 kb on + strandat 2067.275 kb on - strandat 2067.497 kb on - strandat 2067.497 kb on - strandat 2067.794 kb on - strand, within SGL_RS11630at 2068.891 kb on + strandat 2068.980 kb on - strand, within SGL_RS11635at 2069.304 kb on + strand, within SGL_RS11635at 2069.330 kb on - strand, within SGL_RS11635at 2069.409 kb on + strand, within SGL_RS11635at 2069.468 kb on + strand, within SGL_RS11635at 2069.476 kb on - strand, within SGL_RS11635at 2069.476 kb on - strand, within SGL_RS11635at 2069.476 kb on - strand, within SGL_RS11635at 2069.477 kb on - strand, within SGL_RS11635at 2069.593 kb on + strand, within SGL_RS11635at 2069.593 kb on + strand, within SGL_RS11635at 2069.654 kb on - strandat 2069.668 kb on + strandat 2069.696 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,067,210 + -1.7
2,067,275 - +1.1
2,067,497 - -1.7
2,067,497 - -3.4
2,067,794 - SGL_RS11630 0.22 +0.6
2,068,891 + +0.7
2,068,980 - SGL_RS11635 0.15 +0.8
2,069,304 + SGL_RS11635 0.53 +0.2
2,069,330 - SGL_RS11635 0.57 +0.1
2,069,409 + SGL_RS11635 0.66 -0.2
2,069,468 + SGL_RS11635 0.73 +0.6
2,069,476 - SGL_RS11635 0.74 +1.7
2,069,476 - SGL_RS11635 0.74 -0.0
2,069,476 - SGL_RS11635 0.74 +0.7
2,069,477 - SGL_RS11635 0.74 -0.7
2,069,593 + SGL_RS11635 0.88 -0.3
2,069,593 + SGL_RS11635 0.88 +0.0
2,069,654 - -0.5
2,069,668 + +0.6
2,069,696 + -0.2

Or see this region's nucleotide sequence