Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11455

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11450 and SGL_RS11455 are separated by 30 nucleotidesSGL_RS11455 and SGL_RS11460 are separated by 153 nucleotides SGL_RS11450: SGL_RS11450 - cysteine--tRNA ligase, at 2,026,675 to 2,028,126 _RS11450 SGL_RS11455: SGL_RS11455 - Maf family nucleotide pyrophosphatase, at 2,028,157 to 2,028,744 _RS11455 SGL_RS11460: SGL_RS11460 - type II CAAX endopeptidase family protein, at 2,028,898 to 2,030,421 _RS11460 Position (kb) 2028 2029Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2028.301 kb on + strand, within SGL_RS11455at 2028.302 kb on + strand, within SGL_RS11455at 2028.302 kb on + strand, within SGL_RS11455at 2028.328 kb on - strand, within SGL_RS11455at 2028.339 kb on - strand, within SGL_RS11455at 2028.407 kb on - strand, within SGL_RS11455at 2028.501 kb on - strand, within SGL_RS11455at 2028.503 kb on + strand, within SGL_RS11455at 2028.503 kb on + strand, within SGL_RS11455at 2028.511 kb on - strand, within SGL_RS11455at 2028.511 kb on - strand, within SGL_RS11455at 2028.592 kb on - strand, within SGL_RS11455at 2028.609 kb on - strand, within SGL_RS11455at 2028.625 kb on - strand, within SGL_RS11455at 2028.714 kb on - strandat 2028.868 kb on + strandat 2028.968 kb on + strandat 2028.968 kb on + strandat 2028.976 kb on - strandat 2029.126 kb on - strand, within SGL_RS11460at 2029.168 kb on - strand, within SGL_RS11460at 2029.199 kb on - strand, within SGL_RS11460at 2029.287 kb on + strand, within SGL_RS11460at 2029.352 kb on - strand, within SGL_RS11460at 2029.410 kb on - strand, within SGL_RS11460at 2029.548 kb on + strand, within SGL_RS11460

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,028,301 + SGL_RS11455 0.24 +0.5
2,028,302 + SGL_RS11455 0.25 +0.1
2,028,302 + SGL_RS11455 0.25 +0.1
2,028,328 - SGL_RS11455 0.29 +0.3
2,028,339 - SGL_RS11455 0.31 +0.4
2,028,407 - SGL_RS11455 0.43 +0.0
2,028,501 - SGL_RS11455 0.59 -0.3
2,028,503 + SGL_RS11455 0.59 -2.2
2,028,503 + SGL_RS11455 0.59 -0.9
2,028,511 - SGL_RS11455 0.60 +0.8
2,028,511 - SGL_RS11455 0.60 -0.0
2,028,592 - SGL_RS11455 0.74 +0.4
2,028,609 - SGL_RS11455 0.77 +0.4
2,028,625 - SGL_RS11455 0.80 +0.3
2,028,714 - -0.0
2,028,868 + -4.0
2,028,968 + -6.0
2,028,968 + -2.5
2,028,976 - -4.0
2,029,126 - SGL_RS11460 0.15 -3.7
2,029,168 - SGL_RS11460 0.18 -4.5
2,029,199 - SGL_RS11460 0.20 -4.6
2,029,287 + SGL_RS11460 0.26 -4.6
2,029,352 - SGL_RS11460 0.30 -2.9
2,029,410 - SGL_RS11460 0.34 -3.2
2,029,548 + SGL_RS11460 0.43 -3.5

Or see this region's nucleotide sequence