Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10540

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10525 and SGL_RS10530 are separated by 69 nucleotidesSGL_RS10530 and SGL_RS10535 are separated by 71 nucleotidesSGL_RS10535 and SGL_RS10540 are separated by 272 nucleotidesSGL_RS10540 and SGL_RS10545 are separated by 6 nucleotidesSGL_RS10545 and SGL_RS10550 are separated by 65 nucleotides SGL_RS10525: SGL_RS10525 - inositol monophosphatase family protein, at 1,830,628 to 1,831,491 _RS10525 SGL_RS10530: SGL_RS10530 - 2Fe-2S iron-sulfur cluster-binding protein, at 1,831,561 to 1,831,929 _RS10530 SGL_RS10535: SGL_RS10535 - tRNA-Ser, at 1,832,001 to 1,832,087 _RS10535 SGL_RS10540: SGL_RS10540 - C40 family peptidase, at 1,832,360 to 1,833,169 _RS10540 SGL_RS10545: SGL_RS10545 - hypothetical protein, at 1,833,176 to 1,833,589 _RS10545 SGL_RS10550: SGL_RS10550 - GUN4 domain-containing protein, at 1,833,655 to 1,834,299 _RS10550 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -2 -1 0 1 2at 1831.567 kb on - strandat 1831.567 kb on - strandat 1831.591 kb on + strandat 1832.103 kb on - strandat 1832.120 kb on + strandat 1832.169 kb on + strandat 1832.171 kb on + strandat 1832.177 kb on - strandat 1833.154 kb on - strandat 1833.250 kb on - strand, within SGL_RS10545at 1833.290 kb on + strand, within SGL_RS10545at 1833.378 kb on + strand, within SGL_RS10545at 1833.554 kb on - strandat 1833.590 kb on + strandat 1833.598 kb on + strandat 1833.689 kb on - strandat 1833.983 kb on + strand, within SGL_RS10550at 1833.991 kb on - strand, within SGL_RS10550at 1834.051 kb on + strand, within SGL_RS10550at 1834.059 kb on - strand, within SGL_RS10550at 1834.059 kb on - strand, within SGL_RS10550

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,831,567 - +0.1
1,831,567 - -0.4
1,831,591 + -2.3
1,832,103 - +1.2
1,832,120 + +0.1
1,832,169 + +0.4
1,832,171 + -0.1
1,832,177 - -0.9
1,833,154 - +0.3
1,833,250 - SGL_RS10545 0.18 +1.8
1,833,290 + SGL_RS10545 0.28 -0.5
1,833,378 + SGL_RS10545 0.49 +0.5
1,833,554 - +0.2
1,833,590 + +0.3
1,833,598 + -0.4
1,833,689 - -0.0
1,833,983 + SGL_RS10550 0.51 -1.2
1,833,991 - SGL_RS10550 0.52 -0.6
1,834,051 + SGL_RS10550 0.61 -0.7
1,834,059 - SGL_RS10550 0.63 -0.8
1,834,059 - SGL_RS10550 0.63 -1.4

Or see this region's nucleotide sequence