Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10440

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10435 and SGL_RS10440 are separated by 152 nucleotidesSGL_RS10440 and SGL_RS10445 are separated by 240 nucleotidesSGL_RS10445 and SGL_RS10450 are separated by 51 nucleotides SGL_RS10435: SGL_RS10435 - DNA primase, at 1,816,855 to 1,818,762 _RS10435 SGL_RS10440: SGL_RS10440 - photosystem II q(b) protein, at 1,818,915 to 1,819,997 _RS10440 SGL_RS10445: SGL_RS10445 - L-threonylcarbamoyladenylate synthase, at 1,820,238 to 1,820,837 _RS10445 SGL_RS10450: SGL_RS10450 - TPM domain-containing protein, at 1,820,889 to 1,821,614 _RS10450 Position (kb) 1818 1819 1820Strain fitness (log2 ratio) -1 0 1 2 3at 1818.802 kb on + strandat 1820.209 kb on - strandat 1820.311 kb on - strand, within SGL_RS10445at 1820.316 kb on + strand, within SGL_RS10445at 1820.324 kb on - strand, within SGL_RS10445at 1820.456 kb on - strand, within SGL_RS10445at 1820.492 kb on + strand, within SGL_RS10445at 1820.808 kb on + strandat 1820.963 kb on - strand, within SGL_RS10450at 1820.968 kb on - strand, within SGL_RS10450

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,818,802 + -0.5
1,820,209 - +0.2
1,820,311 - SGL_RS10445 0.12 +2.9
1,820,316 + SGL_RS10445 0.13 +2.7
1,820,324 - SGL_RS10445 0.14 +3.1
1,820,456 - SGL_RS10445 0.36 +1.0
1,820,492 + SGL_RS10445 0.42 +2.9
1,820,808 + +2.0
1,820,963 - SGL_RS10450 0.10 +0.5
1,820,968 - SGL_RS10450 0.11 +1.8

Or see this region's nucleotide sequence