Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10395

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10390 and SGL_RS10395 are separated by 574 nucleotidesSGL_RS10395 and SGL_RS10400 are separated by 96 nucleotides SGL_RS10390: SGL_RS10390 - magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase, at 1,805,220 to 1,806,296 _RS10390 SGL_RS10395: SGL_RS10395 - hypothetical protein, at 1,806,871 to 1,807,236 _RS10395 SGL_RS10400: SGL_RS10400 - LCP family protein, at 1,807,333 to 1,808,721 _RS10400 Position (kb) 1806 1807 1808Strain fitness (log2 ratio) -1 0 1 2at 1806.018 kb on - strand, within SGL_RS10390at 1806.178 kb on - strand, within SGL_RS10390at 1806.262 kb on + strandat 1806.286 kb on - strandat 1806.602 kb on + strandat 1806.765 kb on - strandat 1806.852 kb on - strandat 1806.929 kb on + strand, within SGL_RS10395at 1807.182 kb on - strand, within SGL_RS10395at 1807.539 kb on - strand, within SGL_RS10400at 1807.624 kb on + strand, within SGL_RS10400at 1807.627 kb on - strand, within SGL_RS10400at 1807.652 kb on - strand, within SGL_RS10400at 1807.737 kb on - strand, within SGL_RS10400at 1807.839 kb on - strand, within SGL_RS10400at 1807.943 kb on + strand, within SGL_RS10400at 1807.971 kb on - strand, within SGL_RS10400at 1808.050 kb on - strand, within SGL_RS10400at 1808.141 kb on - strand, within SGL_RS10400at 1808.222 kb on + strand, within SGL_RS10400

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,806,018 - SGL_RS10390 0.74 +0.2
1,806,178 - SGL_RS10390 0.89 +0.4
1,806,262 + +0.8
1,806,286 - +0.2
1,806,602 + +0.2
1,806,765 - +1.1
1,806,852 - +1.6
1,806,929 + SGL_RS10395 0.16 +1.8
1,807,182 - SGL_RS10395 0.85 +1.9
1,807,539 - SGL_RS10400 0.15 +0.3
1,807,624 + SGL_RS10400 0.21 +0.4
1,807,627 - SGL_RS10400 0.21 +0.6
1,807,652 - SGL_RS10400 0.23 +0.3
1,807,737 - SGL_RS10400 0.29 -0.6
1,807,839 - SGL_RS10400 0.36 -0.8
1,807,943 + SGL_RS10400 0.44 -1.3
1,807,971 - SGL_RS10400 0.46 -1.4
1,808,050 - SGL_RS10400 0.52 -1.0
1,808,141 - SGL_RS10400 0.58 -0.2
1,808,222 + SGL_RS10400 0.64 -0.9

Or see this region's nucleotide sequence