Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10225

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10220 and SGL_RS10225 overlap by 4 nucleotidesSGL_RS10225 and SGL_RS10230 are separated by 344 nucleotides SGL_RS10220: SGL_RS10220 - TRAP transporter substrate-binding protein, at 1,763,726 to 1,764,838 _RS10220 SGL_RS10225: SGL_RS10225 - EAL domain-containing protein, at 1,764,835 to 1,766,925 _RS10225 SGL_RS10230: SGL_RS10230 - orange carotenoid protein N-terminal domain-containing protein, at 1,767,270 to 1,768,223 _RS10230 Position (kb) 1764 1765 1766 1767Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1763.883 kb on - strand, within SGL_RS10220at 1764.007 kb on - strand, within SGL_RS10220at 1764.019 kb on - strand, within SGL_RS10220at 1764.133 kb on + strand, within SGL_RS10220at 1764.219 kb on - strand, within SGL_RS10220at 1764.366 kb on + strand, within SGL_RS10220at 1764.366 kb on + strand, within SGL_RS10220at 1764.407 kb on - strand, within SGL_RS10220at 1764.414 kb on - strand, within SGL_RS10220at 1764.972 kb on + strandat 1765.693 kb on + strand, within SGL_RS10225at 1766.046 kb on - strand, within SGL_RS10225at 1766.173 kb on - strand, within SGL_RS10225at 1766.436 kb on + strand, within SGL_RS10225at 1766.500 kb on + strand, within SGL_RS10225at 1766.930 kb on - strandat 1767.288 kb on - strandat 1767.386 kb on + strand, within SGL_RS10230at 1767.496 kb on + strand, within SGL_RS10230at 1767.546 kb on + strand, within SGL_RS10230at 1767.546 kb on + strand, within SGL_RS10230at 1767.546 kb on + strand, within SGL_RS10230at 1767.554 kb on - strand, within SGL_RS10230at 1767.621 kb on + strand, within SGL_RS10230at 1767.810 kb on + strand, within SGL_RS10230at 1767.834 kb on - strand, within SGL_RS10230at 1767.869 kb on - strand, within SGL_RS10230at 1767.912 kb on - strand, within SGL_RS10230

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,763,883 - SGL_RS10220 0.14 -0.0
1,764,007 - SGL_RS10220 0.25 +0.9
1,764,019 - SGL_RS10220 0.26 +0.2
1,764,133 + SGL_RS10220 0.37 +0.4
1,764,219 - SGL_RS10220 0.44 +0.6
1,764,366 + SGL_RS10220 0.58 +0.4
1,764,366 + SGL_RS10220 0.58 -0.4
1,764,407 - SGL_RS10220 0.61 +0.3
1,764,414 - SGL_RS10220 0.62 +0.4
1,764,972 + +1.6
1,765,693 + SGL_RS10225 0.41 +1.6
1,766,046 - SGL_RS10225 0.58 +1.8
1,766,173 - SGL_RS10225 0.64 +2.4
1,766,436 + SGL_RS10225 0.77 +1.1
1,766,500 + SGL_RS10225 0.80 +1.7
1,766,930 - +2.0
1,767,288 - -4.6
1,767,386 + SGL_RS10230 0.12 -4.2
1,767,496 + SGL_RS10230 0.24 -4.8
1,767,546 + SGL_RS10230 0.29 -3.8
1,767,546 + SGL_RS10230 0.29 -4.1
1,767,546 + SGL_RS10230 0.29 -3.8
1,767,554 - SGL_RS10230 0.30 -4.0
1,767,621 + SGL_RS10230 0.37 -4.8
1,767,810 + SGL_RS10230 0.57 -5.7
1,767,834 - SGL_RS10230 0.59 -5.0
1,767,869 - SGL_RS10230 0.63 -3.2
1,767,912 - SGL_RS10230 0.67 -4.3

Or see this region's nucleotide sequence