Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10220 and SGL_RS10225 overlap by 4 nucleotides SGL_RS10225 and SGL_RS10230 are separated by 344 nucleotides
SGL_RS10220: SGL_RS10220 - TRAP transporter substrate-binding protein, at 1,763,726 to 1,764,838
_RS10220
SGL_RS10225: SGL_RS10225 - EAL domain-containing protein, at 1,764,835 to 1,766,925
_RS10225
SGL_RS10230: SGL_RS10230 - orange carotenoid protein N-terminal domain-containing protein, at 1,767,270 to 1,768,223
_RS10230
Position (kb)
1764
1765
1766
1767 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1763.883 kb on - strand, within SGL_RS10220 at 1764.007 kb on - strand, within SGL_RS10220 at 1764.019 kb on - strand, within SGL_RS10220 at 1764.133 kb on + strand, within SGL_RS10220 at 1764.219 kb on - strand, within SGL_RS10220 at 1764.366 kb on + strand, within SGL_RS10220 at 1764.366 kb on + strand, within SGL_RS10220 at 1764.407 kb on - strand, within SGL_RS10220 at 1764.414 kb on - strand, within SGL_RS10220 at 1764.972 kb on + strand at 1765.693 kb on + strand, within SGL_RS10225 at 1766.046 kb on - strand, within SGL_RS10225 at 1766.173 kb on - strand, within SGL_RS10225 at 1766.436 kb on + strand, within SGL_RS10225 at 1766.500 kb on + strand, within SGL_RS10225 at 1766.930 kb on - strand at 1767.288 kb on - strand at 1767.386 kb on + strand, within SGL_RS10230 at 1767.496 kb on + strand, within SGL_RS10230 at 1767.546 kb on + strand, within SGL_RS10230 at 1767.546 kb on + strand, within SGL_RS10230 at 1767.546 kb on + strand, within SGL_RS10230 at 1767.554 kb on - strand, within SGL_RS10230 at 1767.621 kb on + strand, within SGL_RS10230 at 1767.810 kb on + strand, within SGL_RS10230 at 1767.834 kb on - strand, within SGL_RS10230 at 1767.869 kb on - strand, within SGL_RS10230 at 1767.912 kb on - strand, within SGL_RS10230
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,763,883 - SGL_RS10220 0.14 -0.0 1,764,007 - SGL_RS10220 0.25 +0.9 1,764,019 - SGL_RS10220 0.26 +0.2 1,764,133 + SGL_RS10220 0.37 +0.4 1,764,219 - SGL_RS10220 0.44 +0.6 1,764,366 + SGL_RS10220 0.58 +0.4 1,764,366 + SGL_RS10220 0.58 -0.4 1,764,407 - SGL_RS10220 0.61 +0.3 1,764,414 - SGL_RS10220 0.62 +0.4 1,764,972 + +1.6 1,765,693 + SGL_RS10225 0.41 +1.6 1,766,046 - SGL_RS10225 0.58 +1.8 1,766,173 - SGL_RS10225 0.64 +2.4 1,766,436 + SGL_RS10225 0.77 +1.1 1,766,500 + SGL_RS10225 0.80 +1.7 1,766,930 - +2.0 1,767,288 - -4.6 1,767,386 + SGL_RS10230 0.12 -4.2 1,767,496 + SGL_RS10230 0.24 -4.8 1,767,546 + SGL_RS10230 0.29 -3.8 1,767,546 + SGL_RS10230 0.29 -4.1 1,767,546 + SGL_RS10230 0.29 -3.8 1,767,554 - SGL_RS10230 0.30 -4.0 1,767,621 + SGL_RS10230 0.37 -4.8 1,767,810 + SGL_RS10230 0.57 -5.7 1,767,834 - SGL_RS10230 0.59 -5.0 1,767,869 - SGL_RS10230 0.63 -3.2 1,767,912 - SGL_RS10230 0.67 -4.3
Or see this region's nucleotide sequence