Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09805

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09800 and SGL_RS09805 are separated by 107 nucleotidesSGL_RS09805 and SGL_RS09810 are separated by 107 nucleotidesSGL_RS09810 and SGL_RS09815 are separated by 159 nucleotides SGL_RS09800: SGL_RS09800 - FAD-binding oxidoreductase, at 1,685,899 to 1,687,218 _RS09800 SGL_RS09805: SGL_RS09805 - photosystem I reaction center subunit IX, at 1,687,326 to 1,687,448 _RS09805 SGL_RS09810: SGL_RS09810 - photosystem I reaction center subunit III, at 1,687,556 to 1,688,053 _RS09810 SGL_RS09815: SGL_RS09815 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,688,213 to 1,689,259 _RS09815 Position (kb) 1687 1688Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 1686.406 kb on + strand, within SGL_RS09800at 1686.421 kb on + strand, within SGL_RS09800at 1686.429 kb on - strand, within SGL_RS09800at 1686.544 kb on - strand, within SGL_RS09800at 1686.862 kb on + strand, within SGL_RS09800at 1687.504 kb on - strandat 1687.831 kb on + strand, within SGL_RS09810at 1688.024 kb on + strandat 1688.025 kb on - strandat 1688.370 kb on - strand, within SGL_RS09815at 1688.393 kb on - strand, within SGL_RS09815at 1688.419 kb on - strand, within SGL_RS09815at 1688.419 kb on - strand, within SGL_RS09815

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,686,406 + SGL_RS09800 0.38 -1.8
1,686,421 + SGL_RS09800 0.40 -2.7
1,686,429 - SGL_RS09800 0.40 +1.8
1,686,544 - SGL_RS09800 0.49 -0.1
1,686,862 + SGL_RS09800 0.73 -1.1
1,687,504 - -2.1
1,687,831 + SGL_RS09810 0.55 -5.6
1,688,024 + -3.9
1,688,025 - -5.9
1,688,370 - SGL_RS09815 0.15 +2.7
1,688,393 - SGL_RS09815 0.17 +2.6
1,688,419 - SGL_RS09815 0.20 +2.5
1,688,419 - SGL_RS09815 0.20 +3.1

Or see this region's nucleotide sequence