Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09330

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09325 and SGL_RS09330 are separated by 43 nucleotidesSGL_RS09330 and SGL_RS18840 are separated by 505 nucleotides SGL_RS09325: SGL_RS09325 - beta-ketoacyl-ACP synthase III, at 1,597,936 to 1,598,928 _RS09325 SGL_RS09330: SGL_RS09330 - photosystem II oxygen evolving complex protein PsbP, at 1,598,972 to 1,599,538 _RS09330 SGL_RS18840: SGL_RS18840 - hypothetical protein, at 1,600,044 to 1,600,286 _RS18840 Position (kb) 1598 1599 1600Strain fitness (log2 ratio) -1 0 1at 1598.988 kb on + strandat 1599.087 kb on - strand, within SGL_RS09330at 1599.089 kb on + strand, within SGL_RS09330at 1599.097 kb on - strand, within SGL_RS09330at 1599.109 kb on - strand, within SGL_RS09330at 1599.134 kb on + strand, within SGL_RS09330at 1599.139 kb on - strand, within SGL_RS09330at 1599.167 kb on - strand, within SGL_RS09330at 1599.167 kb on - strand, within SGL_RS09330at 1599.336 kb on - strand, within SGL_RS09330at 1599.342 kb on - strand, within SGL_RS09330at 1599.363 kb on - strand, within SGL_RS09330at 1599.463 kb on - strand, within SGL_RS09330at 1599.470 kb on + strand, within SGL_RS09330at 1599.478 kb on + strand, within SGL_RS09330at 1599.486 kb on - strandat 1599.490 kb on + strandat 1599.588 kb on + strandat 1599.693 kb on + strandat 1600.197 kb on - strand, within SGL_RS18840

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,598,988 + +0.1
1,599,087 - SGL_RS09330 0.20 +0.0
1,599,089 + SGL_RS09330 0.21 -1.1
1,599,097 - SGL_RS09330 0.22 -0.1
1,599,109 - SGL_RS09330 0.24 +0.1
1,599,134 + SGL_RS09330 0.29 -0.0
1,599,139 - SGL_RS09330 0.29 -0.6
1,599,167 - SGL_RS09330 0.34 -0.4
1,599,167 - SGL_RS09330 0.34 -1.0
1,599,336 - SGL_RS09330 0.64 -1.2
1,599,342 - SGL_RS09330 0.65 +0.2
1,599,363 - SGL_RS09330 0.69 +0.4
1,599,463 - SGL_RS09330 0.87 -1.1
1,599,470 + SGL_RS09330 0.88 +0.1
1,599,478 + SGL_RS09330 0.89 +0.5
1,599,486 - -0.5
1,599,490 + +0.5
1,599,588 + -0.5
1,599,693 + +0.4
1,600,197 - SGL_RS18840 0.63 +0.4

Or see this region's nucleotide sequence