Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09280 and SGL_RS09285 are separated by 9 nucleotides SGL_RS09285 and SGL_RS09290 are separated by 72 nucleotides SGL_RS09290 and SGL_RS09295 are separated by 113 nucleotides
SGL_RS09280: SGL_RS09280 - DUF3084 domain-containing protein, at 1,587,899 to 1,589,374
_RS09280
SGL_RS09285: SGL_RS09285 - global nitrogen regulator NtcA, at 1,589,384 to 1,590,061
_RS09285
SGL_RS09290: SGL_RS09290 - hypothetical protein, at 1,590,134 to 1,590,382
_RS09290
SGL_RS09295: SGL_RS09295 - alpha/beta hydrolase, at 1,590,496 to 1,592,364
_RS09295
Position (kb)
1590
1591 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1590.117 kb on + strand at 1590.142 kb on + strand at 1590.205 kb on - strand, within SGL_RS09290 at 1590.289 kb on - strand, within SGL_RS09290 at 1590.456 kb on + strand at 1590.581 kb on - strand at 1590.664 kb on - strand at 1590.900 kb on + strand, within SGL_RS09295 at 1590.906 kb on - strand, within SGL_RS09295 at 1590.906 kb on - strand, within SGL_RS09295 at 1591.044 kb on - strand, within SGL_RS09295 at 1591.063 kb on - strand, within SGL_RS09295 at 1591.063 kb on - strand, within SGL_RS09295 at 1591.119 kb on - strand, within SGL_RS09295 at 1591.157 kb on - strand, within SGL_RS09295 at 1591.227 kb on + strand, within SGL_RS09295 at 1591.227 kb on + strand, within SGL_RS09295
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,590,117 + +0.9 1,590,142 + -1.4 1,590,205 - SGL_RS09290 0.29 -1.3 1,590,289 - SGL_RS09290 0.62 -0.7 1,590,456 + -0.3 1,590,581 - -1.1 1,590,664 - -4.3 1,590,900 + SGL_RS09295 0.22 -3.1 1,590,906 - SGL_RS09295 0.22 -3.2 1,590,906 - SGL_RS09295 0.22 -4.2 1,591,044 - SGL_RS09295 0.29 -3.8 1,591,063 - SGL_RS09295 0.30 -1.6 1,591,063 - SGL_RS09295 0.30 -2.7 1,591,119 - SGL_RS09295 0.33 -3.1 1,591,157 - SGL_RS09295 0.35 -3.9 1,591,227 + SGL_RS09295 0.39 -5.9 1,591,227 + SGL_RS09295 0.39 -2.7
Or see this region's nucleotide sequence