Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09200 and SGL_RS09205 are separated by 164 nucleotides SGL_RS09205 and SGL_RS09210 are separated by 189 nucleotides SGL_RS09210 and SGL_RS09215 are separated by 7 nucleotides
SGL_RS09200: SGL_RS09200 - two-component system response regulator, at 1,568,317 to 1,569,423
_RS09200
SGL_RS09205: SGL_RS09205 - cupin domain-containing protein, at 1,569,588 to 1,570,019
_RS09205
SGL_RS09210: SGL_RS09210 - signal recognition particle-docking protein FtsY, at 1,570,209 to 1,571,723
_RS09210
SGL_RS09215: SGL_RS09215 - lysophospholipid acyltransferase family protein, at 1,571,731 to 1,572,615
_RS09215
Position (kb)
1570
1571
1572 Strain fitness (log2 ratio)
-1
0
1
2 at 1569.281 kb on - strand, within SGL_RS09200 at 1569.462 kb on + strand at 1569.569 kb on + strand at 1569.607 kb on + strand at 1569.728 kb on - strand, within SGL_RS09205 at 1569.939 kb on + strand, within SGL_RS09205 at 1572.007 kb on + strand, within SGL_RS09215 at 1572.015 kb on - strand, within SGL_RS09215 at 1572.058 kb on + strand, within SGL_RS09215 at 1572.080 kb on - strand, within SGL_RS09215 at 1572.082 kb on + strand, within SGL_RS09215 at 1572.082 kb on + strand, within SGL_RS09215 at 1572.082 kb on + strand, within SGL_RS09215 at 1572.082 kb on + strand, within SGL_RS09215 at 1572.082 kb on + strand, within SGL_RS09215 at 1572.082 kb on + strand, within SGL_RS09215 at 1572.090 kb on - strand, within SGL_RS09215 at 1572.090 kb on - strand, within SGL_RS09215 at 1572.090 kb on - strand, within SGL_RS09215 at 1572.090 kb on - strand, within SGL_RS09215 at 1572.110 kb on + strand, within SGL_RS09215 at 1572.123 kb on - strand, within SGL_RS09215 at 1572.242 kb on - strand, within SGL_RS09215 at 1572.267 kb on - strand, within SGL_RS09215 at 1572.520 kb on + strand, within SGL_RS09215 at 1572.535 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,569,281 - SGL_RS09200 0.87 -1.2 1,569,462 + +0.4 1,569,569 + -0.5 1,569,607 + -0.3 1,569,728 - SGL_RS09205 0.32 +0.0 1,569,939 + SGL_RS09205 0.81 -0.2 1,572,007 + SGL_RS09215 0.31 +0.5 1,572,015 - SGL_RS09215 0.32 -0.7 1,572,058 + SGL_RS09215 0.37 -0.1 1,572,080 - SGL_RS09215 0.39 +0.9 1,572,082 + SGL_RS09215 0.40 +0.8 1,572,082 + SGL_RS09215 0.40 -0.4 1,572,082 + SGL_RS09215 0.40 -0.8 1,572,082 + SGL_RS09215 0.40 +0.6 1,572,082 + SGL_RS09215 0.40 +0.4 1,572,082 + SGL_RS09215 0.40 -0.6 1,572,090 - SGL_RS09215 0.41 -0.7 1,572,090 - SGL_RS09215 0.41 +0.1 1,572,090 - SGL_RS09215 0.41 +2.0 1,572,090 - SGL_RS09215 0.41 +0.5 1,572,110 + SGL_RS09215 0.43 -0.3 1,572,123 - SGL_RS09215 0.44 -0.2 1,572,242 - SGL_RS09215 0.58 -0.5 1,572,267 - SGL_RS09215 0.61 -0.4 1,572,520 + SGL_RS09215 0.89 -0.1 1,572,535 - +0.1
Or see this region's nucleotide sequence