Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09210

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09200 and SGL_RS09205 are separated by 164 nucleotidesSGL_RS09205 and SGL_RS09210 are separated by 189 nucleotidesSGL_RS09210 and SGL_RS09215 are separated by 7 nucleotides SGL_RS09200: SGL_RS09200 - two-component system response regulator, at 1,568,317 to 1,569,423 _RS09200 SGL_RS09205: SGL_RS09205 - cupin domain-containing protein, at 1,569,588 to 1,570,019 _RS09205 SGL_RS09210: SGL_RS09210 - signal recognition particle-docking protein FtsY, at 1,570,209 to 1,571,723 _RS09210 SGL_RS09215: SGL_RS09215 - lysophospholipid acyltransferase family protein, at 1,571,731 to 1,572,615 _RS09215 Position (kb) 1570 1571 1572Strain fitness (log2 ratio) -1 0 1 2at 1569.281 kb on - strand, within SGL_RS09200at 1569.462 kb on + strandat 1569.569 kb on + strandat 1569.607 kb on + strandat 1569.728 kb on - strand, within SGL_RS09205at 1569.939 kb on + strand, within SGL_RS09205at 1572.007 kb on + strand, within SGL_RS09215at 1572.015 kb on - strand, within SGL_RS09215at 1572.058 kb on + strand, within SGL_RS09215at 1572.080 kb on - strand, within SGL_RS09215at 1572.082 kb on + strand, within SGL_RS09215at 1572.082 kb on + strand, within SGL_RS09215at 1572.082 kb on + strand, within SGL_RS09215at 1572.082 kb on + strand, within SGL_RS09215at 1572.082 kb on + strand, within SGL_RS09215at 1572.082 kb on + strand, within SGL_RS09215at 1572.090 kb on - strand, within SGL_RS09215at 1572.090 kb on - strand, within SGL_RS09215at 1572.090 kb on - strand, within SGL_RS09215at 1572.090 kb on - strand, within SGL_RS09215at 1572.110 kb on + strand, within SGL_RS09215at 1572.123 kb on - strand, within SGL_RS09215at 1572.242 kb on - strand, within SGL_RS09215at 1572.267 kb on - strand, within SGL_RS09215at 1572.520 kb on + strand, within SGL_RS09215at 1572.535 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,569,281 - SGL_RS09200 0.87 -1.2
1,569,462 + +0.4
1,569,569 + -0.5
1,569,607 + -0.3
1,569,728 - SGL_RS09205 0.32 +0.0
1,569,939 + SGL_RS09205 0.81 -0.2
1,572,007 + SGL_RS09215 0.31 +0.5
1,572,015 - SGL_RS09215 0.32 -0.7
1,572,058 + SGL_RS09215 0.37 -0.1
1,572,080 - SGL_RS09215 0.39 +0.9
1,572,082 + SGL_RS09215 0.40 +0.8
1,572,082 + SGL_RS09215 0.40 -0.4
1,572,082 + SGL_RS09215 0.40 -0.8
1,572,082 + SGL_RS09215 0.40 +0.6
1,572,082 + SGL_RS09215 0.40 +0.4
1,572,082 + SGL_RS09215 0.40 -0.6
1,572,090 - SGL_RS09215 0.41 -0.7
1,572,090 - SGL_RS09215 0.41 +0.1
1,572,090 - SGL_RS09215 0.41 +2.0
1,572,090 - SGL_RS09215 0.41 +0.5
1,572,110 + SGL_RS09215 0.43 -0.3
1,572,123 - SGL_RS09215 0.44 -0.2
1,572,242 - SGL_RS09215 0.58 -0.5
1,572,267 - SGL_RS09215 0.61 -0.4
1,572,520 + SGL_RS09215 0.89 -0.1
1,572,535 - +0.1

Or see this region's nucleotide sequence