Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08935

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08920 and SGL_RS08925 are separated by 42 nucleotidesSGL_RS08925 and SGL_RS08930 are separated by 50 nucleotidesSGL_RS08930 and SGL_RS08935 are separated by 38 nucleotidesSGL_RS08935 and SGL_RS08940 are separated by 99 nucleotides SGL_RS08920: SGL_RS08920 - NAD(P)H-quinone oxidoreductase subunit H, at 1,509,990 to 1,511,174 _RS08920 SGL_RS08925: SGL_RS08925 - hypothetical protein, at 1,511,217 to 1,511,621 _RS08925 SGL_RS08930: SGL_RS08930 - hypothetical protein, at 1,511,672 to 1,511,977 _RS08930 SGL_RS08935: SGL_RS08935 - YheT family hydrolase, at 1,512,016 to 1,513,125 _RS08935 SGL_RS08940: SGL_RS08940 - IS5 family transposase, at 1,513,225 to 1,514,010 _RS08940 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -3 -2 -1 0 1at 1511.358 kb on + strand, within SGL_RS08925at 1511.366 kb on - strand, within SGL_RS08925at 1511.457 kb on - strand, within SGL_RS08925at 1511.700 kb on + strandat 1511.713 kb on - strand, within SGL_RS08930at 1511.837 kb on - strand, within SGL_RS08930at 1511.883 kb on - strand, within SGL_RS08930at 1511.906 kb on + strand, within SGL_RS08930at 1511.908 kb on + strand, within SGL_RS08930at 1511.914 kb on - strand, within SGL_RS08930at 1511.989 kb on + strandat 1512.002 kb on - strandat 1512.107 kb on - strandat 1512.197 kb on + strand, within SGL_RS08935at 1512.392 kb on + strand, within SGL_RS08935at 1512.400 kb on - strand, within SGL_RS08935at 1512.400 kb on - strand, within SGL_RS08935at 1512.460 kb on + strand, within SGL_RS08935at 1512.478 kb on - strand, within SGL_RS08935at 1512.497 kb on + strand, within SGL_RS08935at 1512.600 kb on + strand, within SGL_RS08935at 1512.777 kb on + strand, within SGL_RS08935at 1512.834 kb on - strand, within SGL_RS08935at 1512.914 kb on - strand, within SGL_RS08935at 1512.960 kb on - strand, within SGL_RS08935at 1513.002 kb on + strand, within SGL_RS08935at 1513.010 kb on - strand, within SGL_RS08935at 1514.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,511,358 + SGL_RS08925 0.35 -2.6
1,511,366 - SGL_RS08925 0.37 -3.2
1,511,457 - SGL_RS08925 0.59 -1.8
1,511,700 + +0.5
1,511,713 - SGL_RS08930 0.13 +0.1
1,511,837 - SGL_RS08930 0.54 +0.6
1,511,883 - SGL_RS08930 0.69 +0.0
1,511,906 + SGL_RS08930 0.76 -0.4
1,511,908 + SGL_RS08930 0.77 +0.6
1,511,914 - SGL_RS08930 0.79 +0.1
1,511,989 + +0.3
1,512,002 - +0.0
1,512,107 - -0.1
1,512,197 + SGL_RS08935 0.16 -0.1
1,512,392 + SGL_RS08935 0.34 +0.5
1,512,400 - SGL_RS08935 0.35 +1.3
1,512,400 - SGL_RS08935 0.35 +0.4
1,512,460 + SGL_RS08935 0.40 +1.1
1,512,478 - SGL_RS08935 0.42 -0.3
1,512,497 + SGL_RS08935 0.43 +0.2
1,512,600 + SGL_RS08935 0.53 +0.5
1,512,777 + SGL_RS08935 0.69 +1.0
1,512,834 - SGL_RS08935 0.74 +0.2
1,512,914 - SGL_RS08935 0.81 -0.4
1,512,960 - SGL_RS08935 0.85 +0.1
1,513,002 + SGL_RS08935 0.89 -0.4
1,513,010 - SGL_RS08935 0.90 +0.6
1,514,055 - -0.2

Or see this region's nucleotide sequence