Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08200

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19835 and SGL_RS19840 overlap by 7 nucleotidesSGL_RS19840 and SGL_RS08200 are separated by 429 nucleotidesSGL_RS08200 and SGL_RS08205 overlap by 17 nucleotides SGL_RS19835: SGL_RS19835 - IS630 transposase-related protein, at 1,346,197 to 1,346,556 _RS19835 SGL_RS19840: SGL_RS19840 - IS630 family transposase, at 1,346,550 to 1,347,044 _RS19840 SGL_RS08200: SGL_RS08200 - photosystem II reaction center protein CP43, at 1,347,474 to 1,348,856 _RS08200 SGL_RS08205: SGL_RS08205 - photosystem II D2 protein (photosystem q(a) protein), at 1,348,840 to 1,349,898 _RS08205 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -1 0 1at 1347.244 kb on - strandat 1347.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,347,244 - -0.1
1,347,321 - -0.5

Or see this region's nucleotide sequence