Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07315 and SGL_RS07320 are separated by 112 nucleotides SGL_RS07320 and SGL_RS07325 are separated by 324 nucleotides SGL_RS07325 and SGL_RS18770 are separated by 85 nucleotides SGL_RS18770 and SGL_RS07330 are separated by 45 nucleotides SGL_RS07330 and SGL_RS07335 are separated by 181 nucleotides
SGL_RS07315: SGL_RS07315 - apocytochrome f, at 1,165,087 to 1,166,073
_RS07315
SGL_RS07320: SGL_RS07320 - cytochrome b6-f complex iron-sulfur subunit, at 1,166,186 to 1,166,728
_RS07320
SGL_RS07325: SGL_RS07325 - photosystem II reaction center protein PsbH, at 1,167,053 to 1,167,247
_RS07325
SGL_RS18770: SGL_RS18770 - photosystem II reaction center protein PsbN, at 1,167,333 to 1,167,464
_RS18770
SGL_RS07330: SGL_RS07330 - YciI family protein, at 1,167,510 to 1,167,779
_RS07330
SGL_RS07335: SGL_RS07335 - hypothetical protein, at 1,167,961 to 1,168,950
_RS07335
Position (kb)
1167
1168 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1167.068 kb on - strand at 1167.077 kb on + strand, within SGL_RS07325 at 1167.331 kb on - strand at 1167.346 kb on - strand at 1167.429 kb on + strand, within SGL_RS18770 at 1167.429 kb on + strand, within SGL_RS18770 at 1167.588 kb on + strand, within SGL_RS07330 at 1167.653 kb on + strand, within SGL_RS07330 at 1167.699 kb on + strand, within SGL_RS07330 at 1167.772 kb on - strand at 1167.781 kb on + strand at 1167.896 kb on - strand at 1167.928 kb on - strand at 1167.963 kb on + strand at 1168.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,167,068 - -6.0 1,167,077 + SGL_RS07325 0.12 -4.8 1,167,331 - -1.3 1,167,346 - +0.3 1,167,429 + SGL_RS18770 0.73 -0.4 1,167,429 + SGL_RS18770 0.73 -0.5 1,167,588 + SGL_RS07330 0.29 -0.2 1,167,653 + SGL_RS07330 0.53 -0.5 1,167,699 + SGL_RS07330 0.70 -0.3 1,167,772 - +0.6 1,167,781 + -0.9 1,167,896 - -0.2 1,167,928 - -0.3 1,167,963 + -0.8 1,168,028 - +0.1
Or see this region's nucleotide sequence