Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07325

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07315 and SGL_RS07320 are separated by 112 nucleotidesSGL_RS07320 and SGL_RS07325 are separated by 324 nucleotidesSGL_RS07325 and SGL_RS18770 are separated by 85 nucleotidesSGL_RS18770 and SGL_RS07330 are separated by 45 nucleotidesSGL_RS07330 and SGL_RS07335 are separated by 181 nucleotides SGL_RS07315: SGL_RS07315 - apocytochrome f, at 1,165,087 to 1,166,073 _RS07315 SGL_RS07320: SGL_RS07320 - cytochrome b6-f complex iron-sulfur subunit, at 1,166,186 to 1,166,728 _RS07320 SGL_RS07325: SGL_RS07325 - photosystem II reaction center protein PsbH, at 1,167,053 to 1,167,247 _RS07325 SGL_RS18770: SGL_RS18770 - photosystem II reaction center protein PsbN, at 1,167,333 to 1,167,464 _RS18770 SGL_RS07330: SGL_RS07330 - YciI family protein, at 1,167,510 to 1,167,779 _RS07330 SGL_RS07335: SGL_RS07335 - hypothetical protein, at 1,167,961 to 1,168,950 _RS07335 Position (kb) 1167 1168Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1167.068 kb on - strandat 1167.077 kb on + strand, within SGL_RS07325at 1167.331 kb on - strandat 1167.346 kb on - strandat 1167.429 kb on + strand, within SGL_RS18770at 1167.429 kb on + strand, within SGL_RS18770at 1167.588 kb on + strand, within SGL_RS07330at 1167.653 kb on + strand, within SGL_RS07330at 1167.699 kb on + strand, within SGL_RS07330at 1167.772 kb on - strandat 1167.781 kb on + strandat 1167.896 kb on - strandat 1167.928 kb on - strandat 1167.963 kb on + strandat 1168.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,167,068 - -6.0
1,167,077 + SGL_RS07325 0.12 -4.8
1,167,331 - -1.3
1,167,346 - +0.3
1,167,429 + SGL_RS18770 0.73 -0.4
1,167,429 + SGL_RS18770 0.73 -0.5
1,167,588 + SGL_RS07330 0.29 -0.2
1,167,653 + SGL_RS07330 0.53 -0.5
1,167,699 + SGL_RS07330 0.70 -0.3
1,167,772 - +0.6
1,167,781 + -0.9
1,167,896 - -0.2
1,167,928 - -0.3
1,167,963 + -0.8
1,168,028 - +0.1

Or see this region's nucleotide sequence