Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07315

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07305 and SGL_RS07310 are separated by 157 nucleotidesSGL_RS07310 and SGL_RS07315 are separated by 69 nucleotidesSGL_RS07315 and SGL_RS07320 are separated by 112 nucleotidesSGL_RS07320 and SGL_RS07325 are separated by 324 nucleotides SGL_RS07305: SGL_RS07305 - N-acetylmuramic acid 6-phosphate etherase, at 1,163,421 to 1,164,338 _RS07305 SGL_RS07310: SGL_RS07310 - DUF3110 domain-containing protein, at 1,164,496 to 1,165,017 _RS07310 SGL_RS07315: SGL_RS07315 - apocytochrome f, at 1,165,087 to 1,166,073 _RS07315 SGL_RS07320: SGL_RS07320 - cytochrome b6-f complex iron-sulfur subunit, at 1,166,186 to 1,166,728 _RS07320 SGL_RS07325: SGL_RS07325 - photosystem II reaction center protein PsbH, at 1,167,053 to 1,167,247 _RS07325 Position (kb) 1165 1166 1167Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1164.112 kb on + strand, within SGL_RS07305at 1164.705 kb on - strand, within SGL_RS07310at 1164.769 kb on + strand, within SGL_RS07310at 1164.787 kb on - strand, within SGL_RS07310at 1164.815 kb on + strand, within SGL_RS07310at 1164.847 kb on + strand, within SGL_RS07310at 1164.948 kb on - strand, within SGL_RS07310at 1164.958 kb on + strand, within SGL_RS07310at 1164.963 kb on + strand, within SGL_RS07310at 1165.034 kb on + strandat 1165.040 kb on + strandat 1165.042 kb on - strandat 1165.048 kb on - strandat 1167.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,164,112 + SGL_RS07305 0.75 -0.4
1,164,705 - SGL_RS07310 0.40 +0.8
1,164,769 + SGL_RS07310 0.52 +0.4
1,164,787 - SGL_RS07310 0.56 +1.3
1,164,815 + SGL_RS07310 0.61 +0.7
1,164,847 + SGL_RS07310 0.67 -0.1
1,164,948 - SGL_RS07310 0.87 +0.2
1,164,958 + SGL_RS07310 0.89 +0.1
1,164,963 + SGL_RS07310 0.89 -0.3
1,165,034 + +1.0
1,165,040 + +1.5
1,165,042 - +1.3
1,165,048 - +2.2
1,167,068 - -6.0

Or see this region's nucleotide sequence