Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07285

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07280 and SGL_RS07285 are separated by 119 nucleotidesSGL_RS07285 and SGL_RS07290 overlap by 18 nucleotidesSGL_RS07290 and SGL_RS07295 are separated by 180 nucleotides SGL_RS07280: SGL_RS07280 - excinuclease ABC subunit UvrC, at 1,157,029 to 1,158,909 _RS07280 SGL_RS07285: SGL_RS07285 - N-acetylmuramoyl-L-alanine amidase, at 1,159,029 to 1,160,804 _RS07285 SGL_RS07290: SGL_RS07290 - M67 family metallopeptidase, at 1,160,787 to 1,161,260 _RS07290 SGL_RS07295: SGL_RS07295 - hypothetical protein, at 1,161,441 to 1,161,824 _RS07295 Position (kb) 1159 1160 1161Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 1158.470 kb on + strand, within SGL_RS07280at 1158.691 kb on + strand, within SGL_RS07280at 1158.719 kb on + strand, within SGL_RS07280at 1159.082 kb on + strandat 1159.100 kb on - strandat 1159.482 kb on + strand, within SGL_RS07285at 1159.502 kb on - strand, within SGL_RS07285at 1159.594 kb on - strand, within SGL_RS07285at 1159.594 kb on - strand, within SGL_RS07285at 1159.747 kb on + strand, within SGL_RS07285at 1159.767 kb on + strand, within SGL_RS07285at 1159.844 kb on - strand, within SGL_RS07285at 1159.876 kb on + strand, within SGL_RS07285at 1159.941 kb on - strand, within SGL_RS07285at 1160.439 kb on + strand, within SGL_RS07285at 1160.496 kb on + strand, within SGL_RS07285at 1160.596 kb on - strand, within SGL_RS07285at 1160.862 kb on - strand, within SGL_RS07290at 1160.931 kb on - strand, within SGL_RS07290at 1161.040 kb on - strand, within SGL_RS07290at 1161.118 kb on - strand, within SGL_RS07290at 1161.538 kb on + strand, within SGL_RS07295at 1161.572 kb on - strand, within SGL_RS07295at 1161.572 kb on - strand, within SGL_RS07295at 1161.584 kb on + strand, within SGL_RS07295at 1161.732 kb on + strand, within SGL_RS07295at 1161.732 kb on + strand, within SGL_RS07295at 1161.740 kb on - strand, within SGL_RS07295at 1161.758 kb on - strand, within SGL_RS07295at 1161.758 kb on - strand, within SGL_RS07295

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,158,470 + SGL_RS07280 0.77 -1.2
1,158,691 + SGL_RS07280 0.88 -1.1
1,158,719 + SGL_RS07280 0.90 +0.4
1,159,082 + -4.0
1,159,100 - -5.6
1,159,482 + SGL_RS07285 0.26 -5.0
1,159,502 - SGL_RS07285 0.27 -7.0
1,159,594 - SGL_RS07285 0.32 -6.3
1,159,594 - SGL_RS07285 0.32 -6.0
1,159,747 + SGL_RS07285 0.40 -6.9
1,159,767 + SGL_RS07285 0.42 -6.4
1,159,844 - SGL_RS07285 0.46 -5.1
1,159,876 + SGL_RS07285 0.48 -4.6
1,159,941 - SGL_RS07285 0.51 -7.1
1,160,439 + SGL_RS07285 0.79 -2.3
1,160,496 + SGL_RS07285 0.83 -6.5
1,160,596 - SGL_RS07285 0.88 -3.1
1,160,862 - SGL_RS07290 0.16 +0.5
1,160,931 - SGL_RS07290 0.30 +0.7
1,161,040 - SGL_RS07290 0.53 -0.8
1,161,118 - SGL_RS07290 0.70 -0.5
1,161,538 + SGL_RS07295 0.25 +0.9
1,161,572 - SGL_RS07295 0.34 +1.8
1,161,572 - SGL_RS07295 0.34 +1.2
1,161,584 + SGL_RS07295 0.37 +1.3
1,161,732 + SGL_RS07295 0.76 +1.4
1,161,732 + SGL_RS07295 0.76 +1.5
1,161,740 - SGL_RS07295 0.78 +1.4
1,161,758 - SGL_RS07295 0.83 +1.2
1,161,758 - SGL_RS07295 0.83 +1.4

Or see this region's nucleotide sequence