Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07280 and SGL_RS07285 are separated by 119 nucleotides SGL_RS07285 and SGL_RS07290 overlap by 18 nucleotides SGL_RS07290 and SGL_RS07295 are separated by 180 nucleotides
SGL_RS07280: SGL_RS07280 - excinuclease ABC subunit UvrC, at 1,157,029 to 1,158,909
_RS07280
SGL_RS07285: SGL_RS07285 - N-acetylmuramoyl-L-alanine amidase, at 1,159,029 to 1,160,804
_RS07285
SGL_RS07290: SGL_RS07290 - M67 family metallopeptidase, at 1,160,787 to 1,161,260
_RS07290
SGL_RS07295: SGL_RS07295 - hypothetical protein, at 1,161,441 to 1,161,824
_RS07295
Position (kb)
1159
1160
1161 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1158.470 kb on + strand, within SGL_RS07280 at 1158.691 kb on + strand, within SGL_RS07280 at 1158.719 kb on + strand, within SGL_RS07280 at 1159.082 kb on + strand at 1159.100 kb on - strand at 1159.482 kb on + strand, within SGL_RS07285 at 1159.502 kb on - strand, within SGL_RS07285 at 1159.594 kb on - strand, within SGL_RS07285 at 1159.594 kb on - strand, within SGL_RS07285 at 1159.747 kb on + strand, within SGL_RS07285 at 1159.767 kb on + strand, within SGL_RS07285 at 1159.844 kb on - strand, within SGL_RS07285 at 1159.876 kb on + strand, within SGL_RS07285 at 1159.941 kb on - strand, within SGL_RS07285 at 1160.439 kb on + strand, within SGL_RS07285 at 1160.496 kb on + strand, within SGL_RS07285 at 1160.596 kb on - strand, within SGL_RS07285 at 1160.862 kb on - strand, within SGL_RS07290 at 1160.931 kb on - strand, within SGL_RS07290 at 1161.040 kb on - strand, within SGL_RS07290 at 1161.118 kb on - strand, within SGL_RS07290 at 1161.538 kb on + strand, within SGL_RS07295 at 1161.572 kb on - strand, within SGL_RS07295 at 1161.572 kb on - strand, within SGL_RS07295 at 1161.584 kb on + strand, within SGL_RS07295 at 1161.732 kb on + strand, within SGL_RS07295 at 1161.732 kb on + strand, within SGL_RS07295 at 1161.740 kb on - strand, within SGL_RS07295 at 1161.758 kb on - strand, within SGL_RS07295 at 1161.758 kb on - strand, within SGL_RS07295
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,158,470 + SGL_RS07280 0.77 -1.2 1,158,691 + SGL_RS07280 0.88 -1.1 1,158,719 + SGL_RS07280 0.90 +0.4 1,159,082 + -4.0 1,159,100 - -5.6 1,159,482 + SGL_RS07285 0.26 -5.0 1,159,502 - SGL_RS07285 0.27 -7.0 1,159,594 - SGL_RS07285 0.32 -6.3 1,159,594 - SGL_RS07285 0.32 -6.0 1,159,747 + SGL_RS07285 0.40 -6.9 1,159,767 + SGL_RS07285 0.42 -6.4 1,159,844 - SGL_RS07285 0.46 -5.1 1,159,876 + SGL_RS07285 0.48 -4.6 1,159,941 - SGL_RS07285 0.51 -7.1 1,160,439 + SGL_RS07285 0.79 -2.3 1,160,496 + SGL_RS07285 0.83 -6.5 1,160,596 - SGL_RS07285 0.88 -3.1 1,160,862 - SGL_RS07290 0.16 +0.5 1,160,931 - SGL_RS07290 0.30 +0.7 1,161,040 - SGL_RS07290 0.53 -0.8 1,161,118 - SGL_RS07290 0.70 -0.5 1,161,538 + SGL_RS07295 0.25 +0.9 1,161,572 - SGL_RS07295 0.34 +1.8 1,161,572 - SGL_RS07295 0.34 +1.2 1,161,584 + SGL_RS07295 0.37 +1.3 1,161,732 + SGL_RS07295 0.76 +1.4 1,161,732 + SGL_RS07295 0.76 +1.5 1,161,740 - SGL_RS07295 0.78 +1.4 1,161,758 - SGL_RS07295 0.83 +1.2 1,161,758 - SGL_RS07295 0.83 +1.4
Or see this region's nucleotide sequence