Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06775 and SGL_RS06780 overlap by 4 nucleotides SGL_RS06780 and SGL_RS06785 are separated by 500 nucleotides SGL_RS06785 and SGL_RS06790 are separated by 52 nucleotides SGL_RS06790 and SGL_RS06795 are separated by 82 nucleotides SGL_RS06795 and SGL_RS06800 are separated by 80 nucleotides
SGL_RS06775: SGL_RS06775 - type II toxin-antitoxin system PemK/MazF family toxin, at 1,048,406 to 1,048,753
_RS06775
SGL_RS06780: SGL_RS06780 - hypothetical protein, at 1,048,750 to 1,049,016
_RS06780
SGL_RS06785: SGL_RS06785 - alpha/beta hydrolase, at 1,049,517 to 1,050,407
_RS06785
SGL_RS06790: SGL_RS06790 - hypothetical protein, at 1,050,460 to 1,050,729
_RS06790
SGL_RS06795: SGL_RS06795 - glutaredoxin 3, at 1,050,812 to 1,051,078
_RS06795
SGL_RS06800: SGL_RS06800 - glutathione synthase, at 1,051,159 to 1,052,121
_RS06800
Position (kb)
1049
1050
1051 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3
4 at 1048.564 kb on - strand, within SGL_RS06775 at 1048.615 kb on + strand, within SGL_RS06775 at 1048.854 kb on + strand, within SGL_RS06780 at 1048.861 kb on + strand, within SGL_RS06780 at 1048.862 kb on - strand, within SGL_RS06780 at 1048.935 kb on + strand, within SGL_RS06780 at 1049.024 kb on - strand at 1049.026 kb on - strand at 1049.212 kb on + strand at 1049.641 kb on - strand, within SGL_RS06785 at 1049.751 kb on + strand, within SGL_RS06785 at 1049.763 kb on + strand, within SGL_RS06785 at 1049.794 kb on + strand, within SGL_RS06785 at 1049.794 kb on + strand, within SGL_RS06785 at 1049.841 kb on + strand, within SGL_RS06785 at 1049.864 kb on + strand, within SGL_RS06785 at 1049.872 kb on - strand, within SGL_RS06785 at 1049.945 kb on + strand, within SGL_RS06785 at 1050.011 kb on - strand, within SGL_RS06785 at 1050.252 kb on + strand, within SGL_RS06785 at 1050.263 kb on + strand, within SGL_RS06785 at 1050.302 kb on + strand, within SGL_RS06785 at 1050.389 kb on + strand at 1050.390 kb on + strand at 1050.397 kb on - strand at 1050.397 kb on - strand at 1050.398 kb on - strand at 1050.409 kb on + strand at 1050.409 kb on - strand at 1050.645 kb on + strand, within SGL_RS06790 at 1050.733 kb on - strand at 1051.037 kb on - strand, within SGL_RS06795 at 1051.082 kb on + strand at 1051.146 kb on + strand at 1051.217 kb on - strand at 1051.310 kb on - strand, within SGL_RS06800 at 1051.374 kb on + strand, within SGL_RS06800 at 1051.389 kb on + strand, within SGL_RS06800 at 1051.389 kb on + strand, within SGL_RS06800
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,048,564 - SGL_RS06775 0.45 -5.2 1,048,615 + SGL_RS06775 0.60 -2.1 1,048,854 + SGL_RS06780 0.39 -3.2 1,048,861 + SGL_RS06780 0.42 -3.1 1,048,862 - SGL_RS06780 0.42 -3.9 1,048,935 + SGL_RS06780 0.69 -3.8 1,049,024 - -6.1 1,049,026 - -4.1 1,049,212 + +0.2 1,049,641 - SGL_RS06785 0.14 -0.1 1,049,751 + SGL_RS06785 0.26 -1.3 1,049,763 + SGL_RS06785 0.28 -2.8 1,049,794 + SGL_RS06785 0.31 -0.7 1,049,794 + SGL_RS06785 0.31 -1.5 1,049,841 + SGL_RS06785 0.36 -0.7 1,049,864 + SGL_RS06785 0.39 +0.1 1,049,872 - SGL_RS06785 0.40 -1.3 1,049,945 + SGL_RS06785 0.48 -0.8 1,050,011 - SGL_RS06785 0.55 -1.4 1,050,252 + SGL_RS06785 0.82 -0.9 1,050,263 + SGL_RS06785 0.84 -0.9 1,050,302 + SGL_RS06785 0.88 -0.5 1,050,389 + -2.2 1,050,390 + -0.6 1,050,397 - -1.1 1,050,397 - -1.5 1,050,398 - -1.1 1,050,409 + -1.3 1,050,409 - -0.6 1,050,645 + SGL_RS06790 0.69 +4.7 1,050,733 - +0.1 1,051,037 - SGL_RS06795 0.84 +0.3 1,051,082 + -0.8 1,051,146 + +0.1 1,051,217 - +1.5 1,051,310 - SGL_RS06800 0.16 +0.1 1,051,374 + SGL_RS06800 0.22 +0.5 1,051,389 + SGL_RS06800 0.24 +0.3 1,051,389 + SGL_RS06800 0.24 +0.3
Or see this region's nucleotide sequence