Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06785

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06775 and SGL_RS06780 overlap by 4 nucleotidesSGL_RS06780 and SGL_RS06785 are separated by 500 nucleotidesSGL_RS06785 and SGL_RS06790 are separated by 52 nucleotidesSGL_RS06790 and SGL_RS06795 are separated by 82 nucleotidesSGL_RS06795 and SGL_RS06800 are separated by 80 nucleotides SGL_RS06775: SGL_RS06775 - type II toxin-antitoxin system PemK/MazF family toxin, at 1,048,406 to 1,048,753 _RS06775 SGL_RS06780: SGL_RS06780 - hypothetical protein, at 1,048,750 to 1,049,016 _RS06780 SGL_RS06785: SGL_RS06785 - alpha/beta hydrolase, at 1,049,517 to 1,050,407 _RS06785 SGL_RS06790: SGL_RS06790 - hypothetical protein, at 1,050,460 to 1,050,729 _RS06790 SGL_RS06795: SGL_RS06795 - glutaredoxin 3, at 1,050,812 to 1,051,078 _RS06795 SGL_RS06800: SGL_RS06800 - glutathione synthase, at 1,051,159 to 1,052,121 _RS06800 Position (kb) 1049 1050 1051Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4at 1048.564 kb on - strand, within SGL_RS06775at 1048.615 kb on + strand, within SGL_RS06775at 1048.854 kb on + strand, within SGL_RS06780at 1048.861 kb on + strand, within SGL_RS06780at 1048.862 kb on - strand, within SGL_RS06780at 1048.935 kb on + strand, within SGL_RS06780at 1049.024 kb on - strandat 1049.026 kb on - strandat 1049.212 kb on + strandat 1049.641 kb on - strand, within SGL_RS06785at 1049.751 kb on + strand, within SGL_RS06785at 1049.763 kb on + strand, within SGL_RS06785at 1049.794 kb on + strand, within SGL_RS06785at 1049.794 kb on + strand, within SGL_RS06785at 1049.841 kb on + strand, within SGL_RS06785at 1049.864 kb on + strand, within SGL_RS06785at 1049.872 kb on - strand, within SGL_RS06785at 1049.945 kb on + strand, within SGL_RS06785at 1050.011 kb on - strand, within SGL_RS06785at 1050.252 kb on + strand, within SGL_RS06785at 1050.263 kb on + strand, within SGL_RS06785at 1050.302 kb on + strand, within SGL_RS06785at 1050.389 kb on + strandat 1050.390 kb on + strandat 1050.397 kb on - strandat 1050.397 kb on - strandat 1050.398 kb on - strandat 1050.409 kb on + strandat 1050.409 kb on - strandat 1050.645 kb on + strand, within SGL_RS06790at 1050.733 kb on - strandat 1051.037 kb on - strand, within SGL_RS06795at 1051.082 kb on + strandat 1051.146 kb on + strandat 1051.217 kb on - strandat 1051.310 kb on - strand, within SGL_RS06800at 1051.374 kb on + strand, within SGL_RS06800at 1051.389 kb on + strand, within SGL_RS06800at 1051.389 kb on + strand, within SGL_RS06800

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,048,564 - SGL_RS06775 0.45 -5.2
1,048,615 + SGL_RS06775 0.60 -2.1
1,048,854 + SGL_RS06780 0.39 -3.2
1,048,861 + SGL_RS06780 0.42 -3.1
1,048,862 - SGL_RS06780 0.42 -3.9
1,048,935 + SGL_RS06780 0.69 -3.8
1,049,024 - -6.1
1,049,026 - -4.1
1,049,212 + +0.2
1,049,641 - SGL_RS06785 0.14 -0.1
1,049,751 + SGL_RS06785 0.26 -1.3
1,049,763 + SGL_RS06785 0.28 -2.8
1,049,794 + SGL_RS06785 0.31 -0.7
1,049,794 + SGL_RS06785 0.31 -1.5
1,049,841 + SGL_RS06785 0.36 -0.7
1,049,864 + SGL_RS06785 0.39 +0.1
1,049,872 - SGL_RS06785 0.40 -1.3
1,049,945 + SGL_RS06785 0.48 -0.8
1,050,011 - SGL_RS06785 0.55 -1.4
1,050,252 + SGL_RS06785 0.82 -0.9
1,050,263 + SGL_RS06785 0.84 -0.9
1,050,302 + SGL_RS06785 0.88 -0.5
1,050,389 + -2.2
1,050,390 + -0.6
1,050,397 - -1.1
1,050,397 - -1.5
1,050,398 - -1.1
1,050,409 + -1.3
1,050,409 - -0.6
1,050,645 + SGL_RS06790 0.69 +4.7
1,050,733 - +0.1
1,051,037 - SGL_RS06795 0.84 +0.3
1,051,082 + -0.8
1,051,146 + +0.1
1,051,217 - +1.5
1,051,310 - SGL_RS06800 0.16 +0.1
1,051,374 + SGL_RS06800 0.22 +0.5
1,051,389 + SGL_RS06800 0.24 +0.3
1,051,389 + SGL_RS06800 0.24 +0.3

Or see this region's nucleotide sequence