Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06770

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06760 and SGL_RS06765 are separated by 35 nucleotidesSGL_RS06765 and SGL_RS06770 are separated by 174 nucleotidesSGL_RS06770 and SGL_RS06775 are separated by 48 nucleotidesSGL_RS06775 and SGL_RS06780 overlap by 4 nucleotides SGL_RS06760: SGL_RS06760 - hypothetical protein, at 1,044,915 to 1,046,366 _RS06760 SGL_RS06765: SGL_RS06765 - GtrA family protein, at 1,046,402 to 1,046,830 _RS06765 SGL_RS06770: SGL_RS06770 - cytosine deaminase, at 1,047,005 to 1,048,357 _RS06770 SGL_RS06775: SGL_RS06775 - type II toxin-antitoxin system PemK/MazF family toxin, at 1,048,406 to 1,048,753 _RS06775 SGL_RS06780: SGL_RS06780 - hypothetical protein, at 1,048,750 to 1,049,016 _RS06780 Position (kb) 1047 1048 1049Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1046.036 kb on + strand, within SGL_RS06760at 1046.099 kb on + strand, within SGL_RS06760at 1046.289 kb on + strandat 1046.869 kb on - strandat 1046.952 kb on + strandat 1047.132 kb on + strandat 1047.231 kb on + strand, within SGL_RS06770at 1047.237 kb on + strand, within SGL_RS06770at 1047.240 kb on - strand, within SGL_RS06770at 1047.292 kb on + strand, within SGL_RS06770at 1047.304 kb on - strand, within SGL_RS06770at 1047.458 kb on + strand, within SGL_RS06770at 1047.531 kb on - strand, within SGL_RS06770at 1047.660 kb on - strand, within SGL_RS06770at 1047.699 kb on - strand, within SGL_RS06770at 1047.840 kb on + strand, within SGL_RS06770at 1047.848 kb on - strand, within SGL_RS06770at 1047.895 kb on + strand, within SGL_RS06770at 1047.931 kb on + strand, within SGL_RS06770at 1048.109 kb on + strand, within SGL_RS06770at 1048.339 kb on - strandat 1048.403 kb on + strandat 1048.456 kb on - strand, within SGL_RS06775at 1048.564 kb on - strand, within SGL_RS06775at 1048.615 kb on + strand, within SGL_RS06775at 1048.854 kb on + strand, within SGL_RS06780at 1048.861 kb on + strand, within SGL_RS06780at 1048.862 kb on - strand, within SGL_RS06780at 1048.935 kb on + strand, within SGL_RS06780at 1049.024 kb on - strandat 1049.026 kb on - strandat 1049.212 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,046,036 + SGL_RS06760 0.77 -0.3
1,046,099 + SGL_RS06760 0.82 +0.8
1,046,289 + +0.5
1,046,869 - +0.3
1,046,952 + -1.1
1,047,132 + -0.3
1,047,231 + SGL_RS06770 0.17 -2.0
1,047,237 + SGL_RS06770 0.17 -2.6
1,047,240 - SGL_RS06770 0.17 -1.3
1,047,292 + SGL_RS06770 0.21 -0.9
1,047,304 - SGL_RS06770 0.22 -1.8
1,047,458 + SGL_RS06770 0.33 -1.0
1,047,531 - SGL_RS06770 0.39 -0.8
1,047,660 - SGL_RS06770 0.48 -2.1
1,047,699 - SGL_RS06770 0.51 -1.5
1,047,840 + SGL_RS06770 0.62 -2.8
1,047,848 - SGL_RS06770 0.62 -1.6
1,047,895 + SGL_RS06770 0.66 -1.0
1,047,931 + SGL_RS06770 0.68 -1.6
1,048,109 + SGL_RS06770 0.82 -2.0
1,048,339 - -0.2
1,048,403 + -1.2
1,048,456 - SGL_RS06775 0.14 -3.6
1,048,564 - SGL_RS06775 0.45 -5.2
1,048,615 + SGL_RS06775 0.60 -2.1
1,048,854 + SGL_RS06780 0.39 -3.2
1,048,861 + SGL_RS06780 0.42 -3.1
1,048,862 - SGL_RS06780 0.42 -3.9
1,048,935 + SGL_RS06780 0.69 -3.8
1,049,024 - -6.1
1,049,026 - -4.1
1,049,212 + +0.2

Or see this region's nucleotide sequence