Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06760 and SGL_RS06765 are separated by 35 nucleotides SGL_RS06765 and SGL_RS06770 are separated by 174 nucleotides SGL_RS06770 and SGL_RS06775 are separated by 48 nucleotides SGL_RS06775 and SGL_RS06780 overlap by 4 nucleotides
SGL_RS06760: SGL_RS06760 - hypothetical protein, at 1,044,915 to 1,046,366
_RS06760
SGL_RS06765: SGL_RS06765 - GtrA family protein, at 1,046,402 to 1,046,830
_RS06765
SGL_RS06770: SGL_RS06770 - cytosine deaminase, at 1,047,005 to 1,048,357
_RS06770
SGL_RS06775: SGL_RS06775 - type II toxin-antitoxin system PemK/MazF family toxin, at 1,048,406 to 1,048,753
_RS06775
SGL_RS06780: SGL_RS06780 - hypothetical protein, at 1,048,750 to 1,049,016
_RS06780
Position (kb)
1047
1048
1049 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1046.036 kb on + strand, within SGL_RS06760 at 1046.099 kb on + strand, within SGL_RS06760 at 1046.289 kb on + strand at 1046.869 kb on - strand at 1046.952 kb on + strand at 1047.132 kb on + strand at 1047.231 kb on + strand, within SGL_RS06770 at 1047.237 kb on + strand, within SGL_RS06770 at 1047.240 kb on - strand, within SGL_RS06770 at 1047.292 kb on + strand, within SGL_RS06770 at 1047.304 kb on - strand, within SGL_RS06770 at 1047.458 kb on + strand, within SGL_RS06770 at 1047.531 kb on - strand, within SGL_RS06770 at 1047.660 kb on - strand, within SGL_RS06770 at 1047.699 kb on - strand, within SGL_RS06770 at 1047.840 kb on + strand, within SGL_RS06770 at 1047.848 kb on - strand, within SGL_RS06770 at 1047.895 kb on + strand, within SGL_RS06770 at 1047.931 kb on + strand, within SGL_RS06770 at 1048.109 kb on + strand, within SGL_RS06770 at 1048.339 kb on - strand at 1048.403 kb on + strand at 1048.456 kb on - strand, within SGL_RS06775 at 1048.564 kb on - strand, within SGL_RS06775 at 1048.615 kb on + strand, within SGL_RS06775 at 1048.854 kb on + strand, within SGL_RS06780 at 1048.861 kb on + strand, within SGL_RS06780 at 1048.862 kb on - strand, within SGL_RS06780 at 1048.935 kb on + strand, within SGL_RS06780 at 1049.024 kb on - strand at 1049.026 kb on - strand at 1049.212 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,046,036 + SGL_RS06760 0.77 -0.3 1,046,099 + SGL_RS06760 0.82 +0.8 1,046,289 + +0.5 1,046,869 - +0.3 1,046,952 + -1.1 1,047,132 + -0.3 1,047,231 + SGL_RS06770 0.17 -2.0 1,047,237 + SGL_RS06770 0.17 -2.6 1,047,240 - SGL_RS06770 0.17 -1.3 1,047,292 + SGL_RS06770 0.21 -0.9 1,047,304 - SGL_RS06770 0.22 -1.8 1,047,458 + SGL_RS06770 0.33 -1.0 1,047,531 - SGL_RS06770 0.39 -0.8 1,047,660 - SGL_RS06770 0.48 -2.1 1,047,699 - SGL_RS06770 0.51 -1.5 1,047,840 + SGL_RS06770 0.62 -2.8 1,047,848 - SGL_RS06770 0.62 -1.6 1,047,895 + SGL_RS06770 0.66 -1.0 1,047,931 + SGL_RS06770 0.68 -1.6 1,048,109 + SGL_RS06770 0.82 -2.0 1,048,339 - -0.2 1,048,403 + -1.2 1,048,456 - SGL_RS06775 0.14 -3.6 1,048,564 - SGL_RS06775 0.45 -5.2 1,048,615 + SGL_RS06775 0.60 -2.1 1,048,854 + SGL_RS06780 0.39 -3.2 1,048,861 + SGL_RS06780 0.42 -3.1 1,048,862 - SGL_RS06780 0.42 -3.9 1,048,935 + SGL_RS06780 0.69 -3.8 1,049,024 - -6.1 1,049,026 - -4.1 1,049,212 + +0.2
Or see this region's nucleotide sequence