Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06730 and SGL_RS06735 are separated by 131 nucleotides SGL_RS06735 and SGL_RS06740 are separated by 51 nucleotides SGL_RS06740 and SGL_RS06745 are separated by 45 nucleotides SGL_RS06745 and SGL_RS06750 are separated by 36 nucleotides SGL_RS06750 and SGL_RS06755 are separated by 66 nucleotides
SGL_RS06730: SGL_RS06730 - succinate dehydrogenase/fumarate reductase flavoprotein subunit, at 1,040,531 to 1,042,258
_RS06730
SGL_RS06735: SGL_RS06735 - PCP reductase family protein, at 1,042,390 to 1,042,557
_RS06735
SGL_RS06740: SGL_RS06740 - histidine triad nucleotide-binding protein, at 1,042,609 to 1,042,953
_RS06740
SGL_RS06745: SGL_RS06745 - alpha/beta fold hydrolase, at 1,042,999 to 1,043,880
_RS06745
SGL_RS06750: SGL_RS06750 - DUF192 domain-containing protein, at 1,043,917 to 1,044,450
_RS06750
SGL_RS06755: SGL_RS06755 - bacterioferritin-associated ferredoxin, at 1,044,517 to 1,044,693
_RS06755
Position (kb) 1042
1043
1044 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1 at 1042.046 kb on - strand, within SGL_RS06730 at 1042.061 kb on - strand, within SGL_RS06730 at 1042.170 kb on + strand at 1042.668 kb on - strand, within SGL_RS06740 at 1042.690 kb on + strand, within SGL_RS06740 at 1042.806 kb on + strand, within SGL_RS06740 at 1042.839 kb on - strand, within SGL_RS06740 at 1042.846 kb on - strand, within SGL_RS06740 at 1042.955 kb on + strand at 1043.126 kb on + strand, within SGL_RS06745 at 1043.170 kb on + strand, within SGL_RS06745 at 1043.190 kb on - strand, within SGL_RS06745 at 1043.200 kb on + strand, within SGL_RS06745 at 1043.217 kb on - strand, within SGL_RS06745 at 1043.244 kb on - strand, within SGL_RS06745 at 1043.381 kb on + strand, within SGL_RS06745 at 1043.391 kb on + strand, within SGL_RS06745 at 1043.473 kb on + strand, within SGL_RS06745 at 1043.481 kb on - strand, within SGL_RS06745 at 1043.535 kb on - strand, within SGL_RS06745 at 1043.631 kb on - strand, within SGL_RS06745 at 1043.666 kb on - strand, within SGL_RS06745 at 1043.666 kb on - strand, within SGL_RS06745 at 1043.778 kb on + strand, within SGL_RS06745 at 1043.808 kb on + strand at 1043.870 kb on + strand at 1043.883 kb on - strand at 1043.883 kb on - strand at 1043.984 kb on + strand, within SGL_RS06750 at 1043.992 kb on - strand, within SGL_RS06750 at 1044.029 kb on + strand, within SGL_RS06750 at 1044.032 kb on - strand, within SGL_RS06750 at 1044.091 kb on + strand, within SGL_RS06750 at 1044.204 kb on + strand, within SGL_RS06750 at 1044.306 kb on + strand, within SGL_RS06750 at 1044.369 kb on - strand, within SGL_RS06750 at 1044.486 kb on - strand at 1044.559 kb on + strand, within SGL_RS06755 at 1044.610 kb on - strand, within SGL_RS06755 at 1044.623 kb on - strand, within SGL_RS06755 at 1044.625 kb on + strand, within SGL_RS06755 at 1044.634 kb on - strand, within SGL_RS06755 at 1044.634 kb on - strand, within SGL_RS06755 at 1044.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,042,046 - SGL_RS06730 0.88 -1.7 1,042,061 - SGL_RS06730 0.89 +0.4 1,042,170 + -1.7 1,042,668 - SGL_RS06740 0.17 -0.9 1,042,690 + SGL_RS06740 0.23 +0.5 1,042,806 + SGL_RS06740 0.57 +1.0 1,042,839 - SGL_RS06740 0.67 -0.7 1,042,846 - SGL_RS06740 0.69 -0.1 1,042,955 + -0.2 1,043,126 + SGL_RS06745 0.14 -0.4 1,043,170 + SGL_RS06745 0.19 -2.2 1,043,190 - SGL_RS06745 0.22 -0.8 1,043,200 + SGL_RS06745 0.23 -0.9 1,043,217 - SGL_RS06745 0.25 -0.1 1,043,244 - SGL_RS06745 0.28 -0.3 1,043,381 + SGL_RS06745 0.43 -0.6 1,043,391 + SGL_RS06745 0.44 -1.5 1,043,473 + SGL_RS06745 0.54 -1.4 1,043,481 - SGL_RS06745 0.55 -1.0 1,043,535 - SGL_RS06745 0.61 -1.1 1,043,631 - SGL_RS06745 0.72 -2.3 1,043,666 - SGL_RS06745 0.76 -1.6 1,043,666 - SGL_RS06745 0.76 -1.1 1,043,778 + SGL_RS06745 0.88 -0.1 1,043,808 + -1.0 1,043,870 + +0.4 1,043,883 - -0.0 1,043,883 - -1.0 1,043,984 + SGL_RS06750 0.13 -3.0 1,043,992 - SGL_RS06750 0.14 -7.9 1,044,029 + SGL_RS06750 0.21 -5.4 1,044,032 - SGL_RS06750 0.22 -5.0 1,044,091 + SGL_RS06750 0.33 -5.6 1,044,204 + SGL_RS06750 0.54 -6.2 1,044,306 + SGL_RS06750 0.73 -7.7 1,044,369 - SGL_RS06750 0.85 -7.5 1,044,486 - -0.9 1,044,559 + SGL_RS06755 0.24 -4.9 1,044,610 - SGL_RS06755 0.53 -4.6 1,044,623 - SGL_RS06755 0.60 -3.7 1,044,625 + SGL_RS06755 0.61 -5.4 1,044,634 - SGL_RS06755 0.66 -8.4 1,044,634 - SGL_RS06755 0.66 -5.9 1,044,859 - -0.5
Or see this region's nucleotide sequence