Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06230 and SGL_RS06235 are separated by 143 nucleotides SGL_RS06235 and SGL_RS06240 overlap by 4 nucleotides SGL_RS06240 and SGL_RS06245 are separated by 55 nucleotides
SGL_RS06230: SGL_RS06230 - 50S ribosomal protein L19, at 926,860 to 927,222
_RS06230
SGL_RS06235: SGL_RS06235 - hypothetical protein, at 927,366 to 927,758
_RS06235
SGL_RS06240: SGL_RS06240 - alpha/beta fold hydrolase, at 927,755 to 928,750
_RS06240
SGL_RS06245: SGL_RS06245 - late competence development ComFB family protein, at 928,806 to 929,885
_RS06245
Position (kb) 927
928
929 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 926.829 kb on + strand at 926.856 kb on - strand at 927.381 kb on - strand at 927.541 kb on - strand, within SGL_RS06235 at 927.674 kb on - strand, within SGL_RS06235 at 927.879 kb on + strand, within SGL_RS06240 at 927.905 kb on + strand, within SGL_RS06240 at 927.924 kb on + strand, within SGL_RS06240 at 928.046 kb on + strand, within SGL_RS06240 at 928.161 kb on + strand, within SGL_RS06240 at 928.296 kb on - strand, within SGL_RS06240 at 928.385 kb on - strand, within SGL_RS06240 at 928.385 kb on - strand, within SGL_RS06240 at 928.480 kb on + strand, within SGL_RS06240 at 929.012 kb on + strand, within SGL_RS06245 at 929.404 kb on - strand, within SGL_RS06245
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 926,829 + +5.1 926,856 - +5.8 927,381 - +0.4 927,541 - SGL_RS06235 0.45 -1.0 927,674 - SGL_RS06235 0.78 -0.6 927,879 + SGL_RS06240 0.12 -1.0 927,905 + SGL_RS06240 0.15 -0.9 927,924 + SGL_RS06240 0.17 -0.1 928,046 + SGL_RS06240 0.29 +0.0 928,161 + SGL_RS06240 0.41 +0.7 928,296 - SGL_RS06240 0.54 -0.8 928,385 - SGL_RS06240 0.63 +0.3 928,385 - SGL_RS06240 0.63 +0.4 928,480 + SGL_RS06240 0.73 -0.3 929,012 + SGL_RS06245 0.19 -1.2 929,404 - SGL_RS06245 0.55 -0.4
Or see this region's nucleotide sequence