Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05100 and SGL_RS05105 are separated by 78 nucleotides SGL_RS05105 and SGL_RS05110 are separated by 100 nucleotides SGL_RS05110 and SGL_RS05115 are separated by 15 nucleotides SGL_RS05115 and SGL_RS05120 are separated by 264 nucleotides SGL_RS05120 and SGL_RS05125 are separated by 7 nucleotides
SGL_RS05100: SGL_RS05100 - ribonuclease R, at 693,211 to 695,211
_RS05100
SGL_RS05105: SGL_RS05105 - thioredoxin family protein, at 695,290 to 695,874
_RS05105
SGL_RS05110: SGL_RS05110 - ATP-dependent zinc metalloprotease FtsH1, at 695,975 to 697,972
_RS05110
SGL_RS05115: SGL_RS05115 - hypothetical protein, at 697,988 to 698,458
_RS05115
SGL_RS05120: SGL_RS05120 - ferrous iron transport protein A, at 698,723 to 698,962
_RS05120
SGL_RS05125: SGL_RS05125 - ferrous iron transport protein B, at 698,970 to 700,814
_RS05125
Position (kb) 695
696
697
698 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 695.210 kb on + strand at 695.227 kb on - strand at 695.271 kb on + strand at 695.314 kb on + strand at 695.354 kb on - strand, within SGL_RS05105 at 695.361 kb on - strand, within SGL_RS05105 at 695.435 kb on + strand, within SGL_RS05105 at 695.446 kb on + strand, within SGL_RS05105 at 695.518 kb on - strand, within SGL_RS05105 at 695.528 kb on + strand, within SGL_RS05105 at 695.584 kb on - strand, within SGL_RS05105 at 695.589 kb on - strand, within SGL_RS05105 at 695.751 kb on + strand, within SGL_RS05105 at 697.937 kb on - strand at 697.981 kb on - strand at 698.091 kb on - strand, within SGL_RS05115 at 698.106 kb on + strand, within SGL_RS05115 at 698.485 kb on + strand at 698.574 kb on + strand at 698.789 kb on + strand, within SGL_RS05120 at 698.797 kb on - strand, within SGL_RS05120 at 698.797 kb on - strand, within SGL_RS05120 at 698.965 kb on - strand at 698.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 695,210 + -2.3 695,227 - -1.1 695,271 + -1.2 695,314 + -0.2 695,354 - SGL_RS05105 0.11 -0.6 695,361 - SGL_RS05105 0.12 -1.0 695,435 + SGL_RS05105 0.25 -0.2 695,446 + SGL_RS05105 0.27 -0.2 695,518 - SGL_RS05105 0.39 +0.5 695,528 + SGL_RS05105 0.41 -0.4 695,584 - SGL_RS05105 0.50 -0.1 695,589 - SGL_RS05105 0.51 -0.6 695,751 + SGL_RS05105 0.79 +0.1 697,937 - +0.4 697,981 - -0.6 698,091 - SGL_RS05115 0.22 -3.4 698,106 + SGL_RS05115 0.25 -4.9 698,485 + +0.2 698,574 + -0.6 698,789 + SGL_RS05120 0.28 +1.4 698,797 - SGL_RS05120 0.31 -0.2 698,797 - SGL_RS05120 0.31 +0.1 698,965 - +0.1 698,970 - -1.1
Or see this region's nucleotide sequence