Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04795

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS04790 and SGL_RS04795 are separated by 12 nucleotidesSGL_RS04795 and SGL_RS04800 are separated by 304 nucleotides SGL_RS04790: SGL_RS04790 - penicillin-binding protein 2, at 622,300 to 624,123 _RS04790 SGL_RS04795: SGL_RS04795 - hypothetical protein, at 624,136 to 624,594 _RS04795 SGL_RS04800: SGL_RS04800 - (Fe-S)-binding protein, at 624,899 to 626,281 _RS04800 Position (kb) 624 625Strain fitness (log2 ratio) -2 -1 0 1at 624.257 kb on + strand, within SGL_RS04795at 625.107 kb on + strand, within SGL_RS04800at 625.127 kb on + strand, within SGL_RS04800at 625.445 kb on - strand, within SGL_RS04800at 625.505 kb on + strand, within SGL_RS04800at 625.505 kb on + strand, within SGL_RS04800

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
624,257 + SGL_RS04795 0.26 -2.4
625,107 + SGL_RS04800 0.15 -0.7
625,127 + SGL_RS04800 0.16 -0.5
625,445 - SGL_RS04800 0.39 -1.7
625,505 + SGL_RS04800 0.44 -0.5
625,505 + SGL_RS04800 0.44 -1.5

Or see this region's nucleotide sequence