Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04345

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS04340 and SGL_RS04345 are separated by 245 nucleotidesSGL_RS04345 and SGL_RS04350 overlap by 4 nucleotidesSGL_RS04350 and SGL_RS04355 overlap by 4 nucleotides SGL_RS04340: SGL_RS04340 - type I glutamate--ammonia ligase, at 531,446 to 532,867 _RS04340 SGL_RS04345: SGL_RS04345 - response regulator, at 533,113 to 537,474 _RS04345 SGL_RS04350: SGL_RS04350 - PleD family two-component system response regulator, at 537,471 to 538,418 _RS04350 SGL_RS04355: SGL_RS04355 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 538,415 to 539,020 _RS04355 Position (kb) 533 534 535 536 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 532.281 kb on + strand, within SGL_RS04340at 532.389 kb on - strand, within SGL_RS04340at 532.436 kb on - strand, within SGL_RS04340at 532.457 kb on + strand, within SGL_RS04340at 532.515 kb on - strand, within SGL_RS04340at 532.547 kb on + strand, within SGL_RS04340at 532.584 kb on + strand, within SGL_RS04340at 532.628 kb on + strand, within SGL_RS04340at 532.715 kb on - strand, within SGL_RS04340at 532.756 kb on + strandat 532.793 kb on + strandat 532.821 kb on - strandat 532.903 kb on - strandat 533.168 kb on + strandat 533.176 kb on - strandat 533.199 kb on - strandat 533.483 kb on + strandat 533.507 kb on - strandat 533.521 kb on + strandat 533.574 kb on - strand, within SGL_RS04345at 533.614 kb on - strand, within SGL_RS04345at 533.639 kb on + strand, within SGL_RS04345at 533.715 kb on + strand, within SGL_RS04345at 533.723 kb on - strand, within SGL_RS04345at 533.952 kb on + strand, within SGL_RS04345at 533.960 kb on - strand, within SGL_RS04345at 534.015 kb on - strand, within SGL_RS04345at 534.277 kb on - strand, within SGL_RS04345at 534.524 kb on + strand, within SGL_RS04345at 534.565 kb on - strand, within SGL_RS04345at 534.645 kb on + strand, within SGL_RS04345at 534.653 kb on - strand, within SGL_RS04345at 534.700 kb on - strand, within SGL_RS04345at 534.803 kb on - strand, within SGL_RS04345at 534.835 kb on - strand, within SGL_RS04345at 534.929 kb on + strand, within SGL_RS04345at 534.976 kb on + strand, within SGL_RS04345at 534.977 kb on + strand, within SGL_RS04345at 534.977 kb on + strand, within SGL_RS04345at 534.985 kb on - strand, within SGL_RS04345at 534.985 kb on - strand, within SGL_RS04345at 534.993 kb on - strand, within SGL_RS04345at 535.057 kb on + strand, within SGL_RS04345at 535.097 kb on - strand, within SGL_RS04345at 535.106 kb on + strand, within SGL_RS04345at 535.117 kb on + strand, within SGL_RS04345at 535.134 kb on + strand, within SGL_RS04345at 535.238 kb on + strand, within SGL_RS04345at 535.303 kb on + strand, within SGL_RS04345at 535.303 kb on + strand, within SGL_RS04345at 535.303 kb on + strand, within SGL_RS04345at 535.303 kb on + strand, within SGL_RS04345at 535.311 kb on - strand, within SGL_RS04345at 535.311 kb on - strand, within SGL_RS04345at 535.311 kb on - strand, within SGL_RS04345at 535.421 kb on - strand, within SGL_RS04345at 535.442 kb on + strand, within SGL_RS04345at 535.450 kb on - strand, within SGL_RS04345at 535.461 kb on + strand, within SGL_RS04345at 535.530 kb on + strand, within SGL_RS04345at 535.533 kb on - strand, within SGL_RS04345at 535.691 kb on + strand, within SGL_RS04345at 535.765 kb on - strand, within SGL_RS04345at 535.857 kb on - strand, within SGL_RS04345at 535.857 kb on - strand, within SGL_RS04345at 535.895 kb on + strand, within SGL_RS04345at 535.945 kb on + strand, within SGL_RS04345at 536.031 kb on - strand, within SGL_RS04345at 536.031 kb on - strand, within SGL_RS04345at 536.031 kb on - strand, within SGL_RS04345at 536.134 kb on + strand, within SGL_RS04345at 536.142 kb on - strand, within SGL_RS04345at 536.142 kb on - strand, within SGL_RS04345at 536.183 kb on - strand, within SGL_RS04345at 536.230 kb on + strand, within SGL_RS04345at 536.255 kb on - strand, within SGL_RS04345at 536.371 kb on - strand, within SGL_RS04345at 536.381 kb on + strand, within SGL_RS04345at 536.389 kb on - strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.400 kb on + strand, within SGL_RS04345at 536.408 kb on - strand, within SGL_RS04345at 536.408 kb on - strand, within SGL_RS04345at 536.408 kb on - strand, within SGL_RS04345at 536.408 kb on - strand, within SGL_RS04345at 536.538 kb on + strand, within SGL_RS04345at 536.548 kb on - strand, within SGL_RS04345at 536.606 kb on + strand, within SGL_RS04345at 536.606 kb on + strand, within SGL_RS04345at 536.614 kb on - strand, within SGL_RS04345at 536.631 kb on + strand, within SGL_RS04345at 536.633 kb on - strand, within SGL_RS04345at 536.639 kb on + strand, within SGL_RS04345at 536.903 kb on + strand, within SGL_RS04345at 536.920 kb on + strand, within SGL_RS04345at 537.023 kb on + strand, within SGL_RS04345at 537.091 kb on + strandat 537.178 kb on - strandat 537.178 kb on - strandat 537.418 kb on + strandat 537.444 kb on - strandat 537.455 kb on + strandat 537.458 kb on + strandat 537.487 kb on - strandat 537.588 kb on - strand, within SGL_RS04350at 538.058 kb on + strand, within SGL_RS04350at 538.087 kb on + strand, within SGL_RS04350at 538.107 kb on + strand, within SGL_RS04350at 538.119 kb on + strand, within SGL_RS04350at 538.120 kb on - strand, within SGL_RS04350at 538.211 kb on - strand, within SGL_RS04350at 538.233 kb on + strand, within SGL_RS04350at 538.249 kb on + strand, within SGL_RS04350at 538.383 kb on + strandat 538.383 kb on + strandat 538.391 kb on - strandat 538.391 kb on - strandat 538.436 kb on - strandat 538.443 kb on + strandat 538.448 kb on + strandat 538.456 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
532,281 + SGL_RS04340 0.59 +0.5
532,389 - SGL_RS04340 0.66 +0.2
532,436 - SGL_RS04340 0.70 +1.6
532,457 + SGL_RS04340 0.71 +0.7
532,515 - SGL_RS04340 0.75 +1.0
532,547 + SGL_RS04340 0.77 +1.1
532,584 + SGL_RS04340 0.80 -0.1
532,628 + SGL_RS04340 0.83 +0.9
532,715 - SGL_RS04340 0.89 -0.6
532,756 + -0.1
532,793 + +1.2
532,821 - +0.7
532,903 - +0.1
533,168 + +2.3
533,176 - +2.3
533,199 - +2.4
533,483 + +2.2
533,507 - +1.4
533,521 + +2.0
533,574 - SGL_RS04345 0.11 +1.8
533,614 - SGL_RS04345 0.11 +1.9
533,639 + SGL_RS04345 0.12 +2.4
533,715 + SGL_RS04345 0.14 +2.9
533,723 - SGL_RS04345 0.14 +1.0
533,952 + SGL_RS04345 0.19 +1.8
533,960 - SGL_RS04345 0.19 +2.1
534,015 - SGL_RS04345 0.21 +1.9
534,277 - SGL_RS04345 0.27 +0.2
534,524 + SGL_RS04345 0.32 +2.5
534,565 - SGL_RS04345 0.33 +1.9
534,645 + SGL_RS04345 0.35 +1.7
534,653 - SGL_RS04345 0.35 +1.7
534,700 - SGL_RS04345 0.36 +2.1
534,803 - SGL_RS04345 0.39 +2.5
534,835 - SGL_RS04345 0.39 +2.0
534,929 + SGL_RS04345 0.42 +1.9
534,976 + SGL_RS04345 0.43 +2.5
534,977 + SGL_RS04345 0.43 +3.0
534,977 + SGL_RS04345 0.43 +2.3
534,985 - SGL_RS04345 0.43 +2.4
534,985 - SGL_RS04345 0.43 +2.1
534,993 - SGL_RS04345 0.43 +2.3
535,057 + SGL_RS04345 0.45 +2.5
535,097 - SGL_RS04345 0.45 +1.7
535,106 + SGL_RS04345 0.46 +2.2
535,117 + SGL_RS04345 0.46 +1.8
535,134 + SGL_RS04345 0.46 +3.2
535,238 + SGL_RS04345 0.49 +2.8
535,303 + SGL_RS04345 0.50 +2.5
535,303 + SGL_RS04345 0.50 +2.4
535,303 + SGL_RS04345 0.50 +2.6
535,303 + SGL_RS04345 0.50 +2.6
535,311 - SGL_RS04345 0.50 +2.1
535,311 - SGL_RS04345 0.50 +2.8
535,311 - SGL_RS04345 0.50 +2.4
535,421 - SGL_RS04345 0.53 +2.9
535,442 + SGL_RS04345 0.53 +2.5
535,450 - SGL_RS04345 0.54 +1.5
535,461 + SGL_RS04345 0.54 +3.0
535,530 + SGL_RS04345 0.55 +2.3
535,533 - SGL_RS04345 0.55 +2.3
535,691 + SGL_RS04345 0.59 +1.5
535,765 - SGL_RS04345 0.61 +1.5
535,857 - SGL_RS04345 0.63 +1.9
535,857 - SGL_RS04345 0.63 +0.8
535,895 + SGL_RS04345 0.64 +2.9
535,945 + SGL_RS04345 0.65 +2.5
536,031 - SGL_RS04345 0.67 +1.2
536,031 - SGL_RS04345 0.67 +1.4
536,031 - SGL_RS04345 0.67 +2.2
536,134 + SGL_RS04345 0.69 +1.6
536,142 - SGL_RS04345 0.69 +2.8
536,142 - SGL_RS04345 0.69 +2.6
536,183 - SGL_RS04345 0.70 +3.0
536,230 + SGL_RS04345 0.71 +0.8
536,255 - SGL_RS04345 0.72 +1.4
536,371 - SGL_RS04345 0.75 +0.9
536,381 + SGL_RS04345 0.75 +1.7
536,389 - SGL_RS04345 0.75 +1.4
536,400 + SGL_RS04345 0.75 +2.2
536,400 + SGL_RS04345 0.75 +2.1
536,400 + SGL_RS04345 0.75 +1.5
536,400 + SGL_RS04345 0.75 +2.5
536,400 + SGL_RS04345 0.75 +2.0
536,400 + SGL_RS04345 0.75 +1.5
536,400 + SGL_RS04345 0.75 +2.2
536,400 + SGL_RS04345 0.75 +2.8
536,400 + SGL_RS04345 0.75 +1.5
536,408 - SGL_RS04345 0.76 +6.2
536,408 - SGL_RS04345 0.76 +2.0
536,408 - SGL_RS04345 0.76 +1.2
536,408 - SGL_RS04345 0.76 +1.3
536,538 + SGL_RS04345 0.79 +2.0
536,548 - SGL_RS04345 0.79 +2.1
536,606 + SGL_RS04345 0.80 +2.3
536,606 + SGL_RS04345 0.80 +1.3
536,614 - SGL_RS04345 0.80 +1.2
536,631 + SGL_RS04345 0.81 +3.9
536,633 - SGL_RS04345 0.81 +1.8
536,639 + SGL_RS04345 0.81 +1.6
536,903 + SGL_RS04345 0.87 +2.3
536,920 + SGL_RS04345 0.87 +1.5
537,023 + SGL_RS04345 0.90 +1.2
537,091 + -0.2
537,178 - -0.4
537,178 - -0.4
537,418 + -1.1
537,444 - -4.4
537,455 + -0.3
537,458 + -0.3
537,487 - -0.3
537,588 - SGL_RS04350 0.12 -0.4
538,058 + SGL_RS04350 0.62 -0.9
538,087 + SGL_RS04350 0.65 -0.4
538,107 + SGL_RS04350 0.67 -1.1
538,119 + SGL_RS04350 0.68 -0.9
538,120 - SGL_RS04350 0.68 -0.4
538,211 - SGL_RS04350 0.78 -0.1
538,233 + SGL_RS04350 0.80 -0.3
538,249 + SGL_RS04350 0.82 -0.9
538,383 + +0.1
538,383 + -0.5
538,391 - +0.6
538,391 - -0.6
538,436 - +1.2
538,443 + +0.2
538,448 + +0.1
538,456 - -0.4

Or see this region's nucleotide sequence