Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04215 and SGL_RS04220 are separated by 129 nucleotides SGL_RS04220 and SGL_RS04225 are separated by 443 nucleotides SGL_RS04225 and SGL_RS19430 are separated by 61 nucleotides SGL_RS19430 and SGL_RS04230 are separated by 2 nucleotides
SGL_RS04215: SGL_RS04215 - MlaE family lipid ABC transporter permease subunit, at 494,828 to 495,619
_RS04215
SGL_RS04220: SGL_RS04220 - TatA/E family twin arginine-targeting protein translocase, at 495,749 to 496,006
_RS04220
SGL_RS04225: SGL_RS04225 - sensor domain-containing diguanylate cyclase, at 496,450 to 497,844
_RS04225
SGL_RS19430: SGL_RS19430 - hypothetical protein, at 497,906 to 498,073
_RS19430
SGL_RS04230: SGL_RS04230 - exonuclease subunit SbcC, at 498,076 to 501,096
_RS04230
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 495.504 kb on - strand, within SGL_RS04215 at 495.532 kb on + strand, within SGL_RS04215 at 495.648 kb on + strand at 496.069 kb on + strand at 496.077 kb on - strand at 496.084 kb on - strand at 496.632 kb on + strand, within SGL_RS04225 at 496.656 kb on + strand, within SGL_RS04225 at 496.791 kb on + strand, within SGL_RS04225 at 497.144 kb on + strand, within SGL_RS04225 at 497.612 kb on + strand, within SGL_RS04225 at 497.640 kb on + strand, within SGL_RS04225 at 497.650 kb on - strand, within SGL_RS04225 at 498.031 kb on - strand, within SGL_RS19430 at 498.154 kb on + strand at 498.168 kb on + strand at 498.168 kb on + strand at 498.377 kb on + strand at 498.410 kb on + strand, within SGL_RS04230
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 495,504 - SGL_RS04215 0.85 -1.5 495,532 + SGL_RS04215 0.89 -1.4 495,648 + -0.4 496,069 + -1.3 496,077 - -1.3 496,084 - -3.3 496,632 + SGL_RS04225 0.13 -2.1 496,656 + SGL_RS04225 0.15 -1.8 496,791 + SGL_RS04225 0.24 -1.4 497,144 + SGL_RS04225 0.50 -0.8 497,612 + SGL_RS04225 0.83 -1.1 497,640 + SGL_RS04225 0.85 -1.2 497,650 - SGL_RS04225 0.86 -1.0 498,031 - SGL_RS19430 0.74 -2.8 498,154 + -1.8 498,168 + -2.5 498,168 + -3.4 498,377 + -2.8 498,410 + SGL_RS04230 0.11 -0.9
Or see this region's nucleotide sequence