Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04115

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04110 and SGL_RS04115 are separated by 165 nucleotidesSGL_RS04115 and SGL_RS04120 are separated by 208 nucleotides SGL_RS04110: SGL_RS04110 - hypothetical protein, at 469,592 to 470,914 _RS04110 SGL_RS04115: SGL_RS04115 - ATP-dependent zinc metalloprotease FtsH3, at 471,080 to 472,930 _RS04115 SGL_RS04120: SGL_RS04120 - IS5 family transposase, at 473,139 to 473,675 _RS04120 Position (kb) 471 472 473Strain fitness (log2 ratio) -2 -1 0 1at 470.234 kb on + strand, within SGL_RS04110at 470.279 kb on + strand, within SGL_RS04110at 470.287 kb on - strand, within SGL_RS04110at 470.345 kb on - strand, within SGL_RS04110at 470.406 kb on - strand, within SGL_RS04110at 470.415 kb on + strand, within SGL_RS04110at 470.415 kb on + strand, within SGL_RS04110at 470.417 kb on + strand, within SGL_RS04110at 470.423 kb on - strand, within SGL_RS04110at 470.427 kb on + strand, within SGL_RS04110at 470.443 kb on + strand, within SGL_RS04110at 470.502 kb on - strand, within SGL_RS04110at 470.605 kb on - strand, within SGL_RS04110at 470.645 kb on - strand, within SGL_RS04110at 470.779 kb on + strand, within SGL_RS04110at 470.854 kb on - strandat 470.858 kb on + strandat 470.858 kb on + strandat 470.866 kb on - strandat 470.890 kb on + strandat 472.983 kb on - strandat 473.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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470,234 + SGL_RS04110 0.49 -0.3
470,279 + SGL_RS04110 0.52 -0.5
470,287 - SGL_RS04110 0.53 -0.0
470,345 - SGL_RS04110 0.57 -1.0
470,406 - SGL_RS04110 0.62 -0.5
470,415 + SGL_RS04110 0.62 -0.4
470,415 + SGL_RS04110 0.62 -0.8
470,417 + SGL_RS04110 0.62 -2.1
470,423 - SGL_RS04110 0.63 -0.3
470,427 + SGL_RS04110 0.63 -1.7
470,443 + SGL_RS04110 0.64 -0.5
470,502 - SGL_RS04110 0.69 -0.3
470,605 - SGL_RS04110 0.77 -1.2
470,645 - SGL_RS04110 0.80 +0.1
470,779 + SGL_RS04110 0.90 -2.5
470,854 - -1.3
470,858 + +0.1
470,858 + -0.2
470,866 - -1.6
470,890 + -2.0
472,983 - -1.1
473,925 - +0.2

Or see this region's nucleotide sequence