Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03900 and SGL_RS03905 are separated by 38 nucleotides SGL_RS03905 and SGL_RS03910 are separated by 74 nucleotides SGL_RS03910 and SGL_RS03915 are separated by 195 nucleotides SGL_RS03915 and SGL_RS03920 are separated by 254 nucleotides
SGL_RS03900: SGL_RS03900 - adenylate/guanylate cyclase domain-containing protein, at 425,468 to 427,738
_RS03900
SGL_RS03905: SGL_RS03905 - DUF928 domain-containing protein, at 427,777 to 428,544
_RS03905
SGL_RS03910: SGL_RS03910 - alpha/beta hydrolase, at 428,619 to 429,614
_RS03910
SGL_RS03915: SGL_RS03915 - DUF4870 domain-containing protein, at 429,810 to 430,169
_RS03915
SGL_RS03920: SGL_RS03920 - urease accessory protein UreG, at 430,424 to 431,044
_RS03920
Position (kb) 428
429
430 Strain fitness (log2 ratio) -1
0
1
2 at 427.784 kb on + strand at 427.838 kb on - strand at 427.840 kb on + strand at 427.993 kb on + strand, within SGL_RS03905 at 428.000 kb on + strand, within SGL_RS03905 at 428.011 kb on - strand, within SGL_RS03905 at 428.011 kb on - strand, within SGL_RS03905 at 428.027 kb on - strand, within SGL_RS03905 at 428.107 kb on - strand, within SGL_RS03905 at 428.145 kb on - strand, within SGL_RS03905 at 428.374 kb on - strand, within SGL_RS03905 at 428.374 kb on - strand, within SGL_RS03905 at 428.374 kb on - strand, within SGL_RS03905 at 428.410 kb on - strand, within SGL_RS03905 at 428.502 kb on - strand at 428.606 kb on - strand at 428.737 kb on - strand, within SGL_RS03910 at 428.838 kb on + strand, within SGL_RS03910 at 428.846 kb on - strand, within SGL_RS03910 at 428.865 kb on - strand, within SGL_RS03910 at 428.880 kb on + strand, within SGL_RS03910 at 428.893 kb on + strand, within SGL_RS03910 at 428.961 kb on + strand, within SGL_RS03910 at 429.218 kb on - strand, within SGL_RS03910 at 429.264 kb on - strand, within SGL_RS03910 at 429.443 kb on - strand, within SGL_RS03910 at 429.472 kb on + strand, within SGL_RS03910 at 429.509 kb on + strand, within SGL_RS03910 at 429.515 kb on - strand at 429.551 kb on - strand at 429.574 kb on + strand at 429.610 kb on - strand at 429.794 kb on - strand at 429.804 kb on - strand at 429.979 kb on - strand, within SGL_RS03915 at 430.212 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 427,784 + +0.1 427,838 - +0.2 427,840 + +0.5 427,993 + SGL_RS03905 0.28 +0.7 428,000 + SGL_RS03905 0.29 -0.4 428,011 - SGL_RS03905 0.30 +0.1 428,011 - SGL_RS03905 0.30 +0.2 428,027 - SGL_RS03905 0.33 +0.0 428,107 - SGL_RS03905 0.43 -0.3 428,145 - SGL_RS03905 0.48 +0.6 428,374 - SGL_RS03905 0.78 -0.3 428,374 - SGL_RS03905 0.78 +1.6 428,374 - SGL_RS03905 0.78 +0.1 428,410 - SGL_RS03905 0.82 -0.6 428,502 - -0.6 428,606 - +0.1 428,737 - SGL_RS03910 0.12 +0.4 428,838 + SGL_RS03910 0.22 +1.1 428,846 - SGL_RS03910 0.23 +0.1 428,865 - SGL_RS03910 0.25 +0.6 428,880 + SGL_RS03910 0.26 +1.9 428,893 + SGL_RS03910 0.28 +1.0 428,961 + SGL_RS03910 0.34 +1.6 429,218 - SGL_RS03910 0.60 +0.7 429,264 - SGL_RS03910 0.65 +1.1 429,443 - SGL_RS03910 0.83 +0.9 429,472 + SGL_RS03910 0.86 +0.7 429,509 + SGL_RS03910 0.89 +1.1 429,515 - +1.4 429,551 - +1.1 429,574 + +1.4 429,610 - +1.4 429,794 - +0.8 429,804 - +0.2 429,979 - SGL_RS03915 0.47 +0.9 430,212 + +0.7
Or see this region's nucleotide sequence