Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03810 and SGL_RS03815 are separated by 241 nucleotides SGL_RS03815 and SGL_RS03820 are separated by 119 nucleotides
SGL_RS03810: SGL_RS03810 - ammonium transporter, at 400,720 to 402,048
_RS03810
SGL_RS03815: SGL_RS03815 - hybrid sensor histidine kinase/response regulator, at 402,290 to 403,432
_RS03815
SGL_RS03820: SGL_RS03820 - universal stress protein, at 403,552 to 404,427
_RS03820
Position (kb) 402
403
404 Strain fitness (log2 ratio) -1
0
1
2 at 401.315 kb on - strand, within SGL_RS03810 at 401.360 kb on - strand, within SGL_RS03810 at 401.452 kb on + strand, within SGL_RS03810 at 401.452 kb on + strand, within SGL_RS03810 at 401.498 kb on - strand, within SGL_RS03810 at 401.512 kb on + strand, within SGL_RS03810 at 401.536 kb on + strand, within SGL_RS03810 at 401.538 kb on - strand, within SGL_RS03810 at 401.539 kb on - strand, within SGL_RS03810 at 401.553 kb on + strand, within SGL_RS03810 at 401.590 kb on + strand, within SGL_RS03810 at 401.618 kb on - strand, within SGL_RS03810 at 401.637 kb on - strand, within SGL_RS03810 at 401.752 kb on + strand, within SGL_RS03810 at 401.759 kb on - strand, within SGL_RS03810 at 401.761 kb on - strand, within SGL_RS03810 at 401.855 kb on + strand, within SGL_RS03810 at 401.943 kb on - strand at 401.968 kb on + strand at 401.976 kb on - strand at 401.976 kb on - strand at 402.362 kb on + strand at 402.375 kb on - strand at 402.377 kb on - strand at 402.506 kb on + strand, within SGL_RS03815 at 402.644 kb on + strand, within SGL_RS03815 at 402.752 kb on - strand, within SGL_RS03815 at 402.826 kb on + strand, within SGL_RS03815 at 402.826 kb on + strand, within SGL_RS03815 at 402.882 kb on + strand, within SGL_RS03815 at 402.928 kb on - strand, within SGL_RS03815 at 402.937 kb on + strand, within SGL_RS03815 at 402.947 kb on + strand, within SGL_RS03815 at 402.955 kb on - strand, within SGL_RS03815 at 403.155 kb on + strand, within SGL_RS03815 at 403.171 kb on - strand, within SGL_RS03815 at 403.219 kb on + strand, within SGL_RS03815 at 403.220 kb on - strand, within SGL_RS03815 at 403.222 kb on + strand, within SGL_RS03815 at 403.247 kb on - strand, within SGL_RS03815 at 403.289 kb on + strand, within SGL_RS03815 at 403.310 kb on + strand, within SGL_RS03815 at 403.310 kb on + strand, within SGL_RS03815 at 403.318 kb on - strand at 403.324 kb on + strand at 403.324 kb on + strand at 403.332 kb on - strand at 403.402 kb on - strand at 403.407 kb on + strand at 403.466 kb on - strand at 403.689 kb on - strand, within SGL_RS03820 at 403.758 kb on - strand, within SGL_RS03820 at 403.778 kb on + strand, within SGL_RS03820 at 403.785 kb on + strand, within SGL_RS03820 at 403.786 kb on - strand, within SGL_RS03820 at 403.809 kb on - strand, within SGL_RS03820 at 403.906 kb on + strand, within SGL_RS03820 at 403.955 kb on + strand, within SGL_RS03820 at 403.976 kb on - strand, within SGL_RS03820 at 403.978 kb on - strand, within SGL_RS03820 at 404.143 kb on + strand, within SGL_RS03820 at 404.153 kb on + strand, within SGL_RS03820 at 404.153 kb on + strand, within SGL_RS03820 at 404.161 kb on - strand, within SGL_RS03820 at 404.267 kb on - strand, within SGL_RS03820 at 404.274 kb on - strand, within SGL_RS03820 at 404.362 kb on + strand at 404.431 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 401,315 - SGL_RS03810 0.45 +0.2 401,360 - SGL_RS03810 0.48 +0.4 401,452 + SGL_RS03810 0.55 +0.4 401,452 + SGL_RS03810 0.55 -0.4 401,498 - SGL_RS03810 0.59 +0.5 401,512 + SGL_RS03810 0.60 +0.3 401,536 + SGL_RS03810 0.61 +0.3 401,538 - SGL_RS03810 0.62 +0.3 401,539 - SGL_RS03810 0.62 +0.2 401,553 + SGL_RS03810 0.63 +0.0 401,590 + SGL_RS03810 0.65 -0.5 401,618 - SGL_RS03810 0.68 -0.1 401,637 - SGL_RS03810 0.69 +0.7 401,752 + SGL_RS03810 0.78 +0.5 401,759 - SGL_RS03810 0.78 +0.5 401,761 - SGL_RS03810 0.78 +0.5 401,855 + SGL_RS03810 0.85 -0.6 401,943 - +0.4 401,968 + -0.0 401,976 - +0.5 401,976 - -0.2 402,362 + +1.4 402,375 - +0.8 402,377 - +1.8 402,506 + SGL_RS03815 0.19 +0.5 402,644 + SGL_RS03815 0.31 +1.5 402,752 - SGL_RS03815 0.40 +0.4 402,826 + SGL_RS03815 0.47 +1.7 402,826 + SGL_RS03815 0.47 +0.5 402,882 + SGL_RS03815 0.52 +1.5 402,928 - SGL_RS03815 0.56 +2.1 402,937 + SGL_RS03815 0.57 +0.9 402,947 + SGL_RS03815 0.57 +1.7 402,955 - SGL_RS03815 0.58 +0.3 403,155 + SGL_RS03815 0.76 +1.5 403,171 - SGL_RS03815 0.77 +1.8 403,219 + SGL_RS03815 0.81 +1.3 403,220 - SGL_RS03815 0.81 +1.0 403,222 + SGL_RS03815 0.82 +1.1 403,247 - SGL_RS03815 0.84 +1.8 403,289 + SGL_RS03815 0.87 +1.1 403,310 + SGL_RS03815 0.89 +1.4 403,310 + SGL_RS03815 0.89 +0.1 403,318 - +1.2 403,324 + +1.6 403,324 + +0.7 403,332 - +1.1 403,402 - +1.2 403,407 + +0.2 403,466 - -0.3 403,689 - SGL_RS03820 0.16 -0.2 403,758 - SGL_RS03820 0.24 +0.1 403,778 + SGL_RS03820 0.26 -0.1 403,785 + SGL_RS03820 0.27 +0.1 403,786 - SGL_RS03820 0.27 -0.2 403,809 - SGL_RS03820 0.29 +0.1 403,906 + SGL_RS03820 0.40 +0.2 403,955 + SGL_RS03820 0.46 -0.2 403,976 - SGL_RS03820 0.48 +0.1 403,978 - SGL_RS03820 0.49 +0.2 404,143 + SGL_RS03820 0.67 -0.2 404,153 + SGL_RS03820 0.69 +0.9 404,153 + SGL_RS03820 0.69 -0.3 404,161 - SGL_RS03820 0.70 +0.1 404,267 - SGL_RS03820 0.82 -0.1 404,274 - SGL_RS03820 0.82 -1.1 404,362 + -0.6 404,431 + +0.4
Or see this region's nucleotide sequence