Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02585 and SGL_RS02590 are separated by 23 nucleotides SGL_RS02590 and SGL_RS02595 are separated by 11 nucleotides SGL_RS02595 and SGL_RS02600 are separated by 132 nucleotides SGL_RS02600 and SGL_RS02605 are separated by 89 nucleotides SGL_RS02605 and SGL_RS02610 are separated by 36 nucleotides
SGL_RS02585: SGL_RS02585 - LptA/OstA family protein, at 154,143 to 154,679
_RS02585
SGL_RS02590: SGL_RS02590 - LPS export ABC transporter ATP-binding protein, at 154,703 to 155,461
_RS02590
SGL_RS02595: SGL_RS02595 - precorrin-6A reductase, at 155,473 to 156,258
_RS02595
SGL_RS02600: SGL_RS02600 - photosystem I reaction center subunit PsaK, at 156,391 to 156,651
_RS02600
SGL_RS02605: SGL_RS02605 - hypothetical protein, at 156,741 to 157,013
_RS02605
SGL_RS02610: SGL_RS02610 - NAD(P)H-quinone oxidoreductase subunit N, at 157,050 to 158,615
_RS02610
Position (kb) 155
156
157 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 154.587 kb on - strand, within SGL_RS02585 at 154.592 kb on + strand, within SGL_RS02585 at 154.600 kb on - strand, within SGL_RS02585 at 154.609 kb on + strand, within SGL_RS02585 at 154.617 kb on - strand, within SGL_RS02585 at 155.915 kb on + strand, within SGL_RS02595 at 155.975 kb on + strand, within SGL_RS02595 at 156.001 kb on - strand, within SGL_RS02595 at 156.307 kb on - strand at 156.474 kb on - strand, within SGL_RS02600 at 156.574 kb on + strand, within SGL_RS02600 at 156.582 kb on - strand, within SGL_RS02600 at 156.682 kb on - strand at 156.834 kb on + strand, within SGL_RS02605 at 157.053 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 154,587 - SGL_RS02585 0.83 -4.6 154,592 + SGL_RS02585 0.84 -1.3 154,600 - SGL_RS02585 0.85 -3.6 154,609 + SGL_RS02585 0.87 -1.3 154,617 - SGL_RS02585 0.88 -2.1 155,915 + SGL_RS02595 0.56 -2.1 155,975 + SGL_RS02595 0.64 -0.5 156,001 - SGL_RS02595 0.67 -2.8 156,307 - -1.1 156,474 - SGL_RS02600 0.32 -2.0 156,574 + SGL_RS02600 0.70 -1.5 156,582 - SGL_RS02600 0.73 -1.6 156,682 - -1.0 156,834 + SGL_RS02605 0.34 -0.5 157,053 + +1.2
Or see this region's nucleotide sequence