Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02070

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02065 and SGL_RS02070 are separated by 24 nucleotidesSGL_RS02070 and SGL_RS02075 are separated by 14 nucleotides SGL_RS02065: SGL_RS02065 - DUF4336 domain-containing protein, at 48,663 to 49,868 _RS02065 SGL_RS02070: SGL_RS02070 - photosystem II reaction center protein Psb28, at 49,893 to 50,231 _RS02070 SGL_RS02075: SGL_RS02075 - ATP-dependent DNA helicase, at 50,246 to 51,895 _RS02075 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2at 48.985 kb on + strand, within SGL_RS02065at 49.102 kb on - strand, within SGL_RS02065at 49.189 kb on + strand, within SGL_RS02065at 49.189 kb on + strand, within SGL_RS02065at 49.197 kb on - strand, within SGL_RS02065at 49.276 kb on - strand, within SGL_RS02065at 49.481 kb on + strand, within SGL_RS02065at 49.565 kb on + strand, within SGL_RS02065at 49.565 kb on + strand, within SGL_RS02065at 49.736 kb on + strand, within SGL_RS02065at 49.744 kb on - strand, within SGL_RS02065at 49.816 kb on + strandat 49.821 kb on + strandat 49.830 kb on + strandat 50.143 kb on + strand, within SGL_RS02070at 50.323 kb on - strandat 50.352 kb on - strandat 50.377 kb on + strandat 50.378 kb on + strandat 50.385 kb on - strandat 50.473 kb on - strand, within SGL_RS02075at 50.489 kb on + strand, within SGL_RS02075at 50.614 kb on + strand, within SGL_RS02075at 50.671 kb on + strand, within SGL_RS02075at 50.682 kb on + strand, within SGL_RS02075at 50.685 kb on - strand, within SGL_RS02075at 50.722 kb on - strand, within SGL_RS02075at 50.737 kb on - strand, within SGL_RS02075at 50.798 kb on + strand, within SGL_RS02075at 50.806 kb on - strand, within SGL_RS02075at 50.806 kb on - strand, within SGL_RS02075at 50.909 kb on - strand, within SGL_RS02075at 51.042 kb on - strand, within SGL_RS02075at 51.101 kb on - strand, within SGL_RS02075at 51.126 kb on + strand, within SGL_RS02075at 51.169 kb on - strand, within SGL_RS02075

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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48,985 + SGL_RS02065 0.27 +0.6
49,102 - SGL_RS02065 0.36 +0.3
49,189 + SGL_RS02065 0.44 -0.4
49,189 + SGL_RS02065 0.44 +0.5
49,197 - SGL_RS02065 0.44 +0.7
49,276 - SGL_RS02065 0.51 +0.3
49,481 + SGL_RS02065 0.68 +0.8
49,565 + SGL_RS02065 0.75 -0.3
49,565 + SGL_RS02065 0.75 -0.5
49,736 + SGL_RS02065 0.89 -0.3
49,744 - SGL_RS02065 0.90 +0.5
49,816 + +0.3
49,821 + +0.2
49,830 + +0.5
50,143 + SGL_RS02070 0.74 -0.9
50,323 - -0.6
50,352 - -0.9
50,377 + +0.8
50,378 + -0.4
50,385 - +0.5
50,473 - SGL_RS02075 0.14 +1.0
50,489 + SGL_RS02075 0.15 +0.6
50,614 + SGL_RS02075 0.22 -0.8
50,671 + SGL_RS02075 0.26 +0.2
50,682 + SGL_RS02075 0.26 +0.4
50,685 - SGL_RS02075 0.27 +0.9
50,722 - SGL_RS02075 0.29 -0.1
50,737 - SGL_RS02075 0.30 +0.0
50,798 + SGL_RS02075 0.33 -0.0
50,806 - SGL_RS02075 0.34 +0.3
50,806 - SGL_RS02075 0.34 +0.8
50,909 - SGL_RS02075 0.40 +1.8
51,042 - SGL_RS02075 0.48 +0.1
51,101 - SGL_RS02075 0.52 +0.1
51,126 + SGL_RS02075 0.53 +0.4
51,169 - SGL_RS02075 0.56 -0.2

Or see this region's nucleotide sequence