Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01910

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01905 and SGL_RS01910 are separated by 606 nucleotidesSGL_RS01910 and SGL_RS19400 overlap by 11 nucleotidesSGL_RS19400 and SGL_RS01915 are separated by 41 nucleotides SGL_RS01905: SGL_RS01905 - GDP-mannose 4,6-dehydratase, at 5,534 to 6,622 _RS01905 SGL_RS01910: SGL_RS01910 - photosystem II q(b) protein, at 7,229 to 8,311 _RS01910 SGL_RS19400: SGL_RS19400 - hypothetical protein, at 8,301 to 8,450 _RS19400 SGL_RS01915: SGL_RS01915 - biosynthetic arginine decarboxylase, at 8,492 to 10,471 _RS01915 Position (kb) 7 8 9Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 6.246 kb on + strand, within SGL_RS01905at 6.355 kb on - strand, within SGL_RS01905at 6.411 kb on - strand, within SGL_RS01905at 6.414 kb on - strand, within SGL_RS01905at 6.416 kb on - strand, within SGL_RS01905at 6.429 kb on + strand, within SGL_RS01905at 6.495 kb on + strand, within SGL_RS01905at 6.495 kb on + strand, within SGL_RS01905at 6.614 kb on - strandat 6.685 kb on + strandat 6.823 kb on + strandat 6.823 kb on + strandat 6.823 kb on + strandat 6.831 kb on - strandat 6.984 kb on - strandat 7.054 kb on + strandat 7.062 kb on - strandat 8.356 kb on + strand, within SGL_RS19400at 8.455 kb on - strandat 8.455 kb on - strandat 8.505 kb on - strandat 8.587 kb on - strandat 8.803 kb on - strand, within SGL_RS01915at 8.815 kb on + strand, within SGL_RS01915at 8.815 kb on + strand, within SGL_RS01915at 8.855 kb on - strand, within SGL_RS01915at 9.067 kb on - strand, within SGL_RS01915at 9.141 kb on - strand, within SGL_RS01915at 9.169 kb on + strand, within SGL_RS01915at 9.175 kb on - strand, within SGL_RS01915at 9.223 kb on + strand, within SGL_RS01915at 9.236 kb on - strand, within SGL_RS01915

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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6,246 + SGL_RS01905 0.65 -2.7
6,355 - SGL_RS01905 0.75 -2.8
6,411 - SGL_RS01905 0.81 -3.9
6,414 - SGL_RS01905 0.81 -4.5
6,416 - SGL_RS01905 0.81 -1.8
6,429 + SGL_RS01905 0.82 -4.1
6,495 + SGL_RS01905 0.88 -4.6
6,495 + SGL_RS01905 0.88 -3.5
6,614 - -3.7
6,685 + -0.6
6,823 + +0.2
6,823 + -0.2
6,823 + +0.9
6,831 - +0.3
6,984 - -0.3
7,054 + -0.2
7,062 - -0.9
8,356 + SGL_RS19400 0.37 -2.4
8,455 - -1.1
8,455 - -2.3
8,505 - -0.4
8,587 - -1.9
8,803 - SGL_RS01915 0.16 -2.4
8,815 + SGL_RS01915 0.16 -1.5
8,815 + SGL_RS01915 0.16 -1.4
8,855 - SGL_RS01915 0.18 -1.1
9,067 - SGL_RS01915 0.29 -1.4
9,141 - SGL_RS01915 0.33 -0.9
9,169 + SGL_RS01915 0.34 -1.4
9,175 - SGL_RS01915 0.34 -1.4
9,223 + SGL_RS01915 0.37 -2.7
9,236 - SGL_RS01915 0.38 -2.6

Or see this region's nucleotide sequence