Experiment: medium light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15415 and SGL_RS15420 are separated by 226 nucleotides SGL_RS15420 and SGL_RS15425 are separated by 130 nucleotides
SGL_RS15415: SGL_RS15415 - response regulator, at 2,909,975 to 2,910,895
_RS15415
SGL_RS15420: SGL_RS15420 - DevA family ABC transporter ATP-binding protein, at 2,911,122 to 2,911,859
_RS15420
SGL_RS15425: SGL_RS15425 - cobalamin biosynthesis protein CobW, at 2,911,990 to 2,913,048
_RS15425
Position (kb)
2911
2912 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2910.217 kb on - strand, within SGL_RS15415 at 2910.365 kb on + strand, within SGL_RS15415 at 2910.606 kb on + strand, within SGL_RS15415 at 2910.870 kb on - strand at 2910.889 kb on + strand at 2910.889 kb on + strand at 2910.904 kb on + strand at 2910.904 kb on - strand at 2910.929 kb on - strand at 2910.929 kb on - strand at 2910.941 kb on - strand at 2910.950 kb on - strand at 2911.146 kb on - strand at 2911.504 kb on + strand, within SGL_RS15420 at 2911.623 kb on + strand, within SGL_RS15420 at 2911.631 kb on - strand, within SGL_RS15420 at 2911.631 kb on - strand, within SGL_RS15420 at 2911.902 kb on - strand at 2912.025 kb on + strand at 2912.092 kb on + strand at 2912.133 kb on - strand, within SGL_RS15425 at 2912.240 kb on - strand, within SGL_RS15425 at 2912.240 kb on - strand, within SGL_RS15425 at 2912.334 kb on + strand, within SGL_RS15425 at 2912.337 kb on - strand, within SGL_RS15425 at 2912.622 kb on - strand, within SGL_RS15425 at 2912.779 kb on + strand, within SGL_RS15425 at 2912.842 kb on + strand, within SGL_RS15425
Per-strain Table
Position Strand Gene LocusTag Fraction medium light; bubbling remove 2,910,217 - SGL_RS15415 0.26 +1.9 2,910,365 + SGL_RS15415 0.42 -0.6 2,910,606 + SGL_RS15415 0.69 -0.1 2,910,870 - -1.7 2,910,889 + -2.4 2,910,889 + +0.5 2,910,904 + +0.2 2,910,904 - -0.5 2,910,929 - -1.0 2,910,929 - -0.8 2,910,941 - -0.7 2,910,950 - +0.2 2,911,146 - +0.1 2,911,504 + SGL_RS15420 0.52 -0.9 2,911,623 + SGL_RS15420 0.68 -1.6 2,911,631 - SGL_RS15420 0.69 -0.5 2,911,631 - SGL_RS15420 0.69 -1.0 2,911,902 - +0.3 2,912,025 + -3.6 2,912,092 + +1.7 2,912,133 - SGL_RS15425 0.14 -2.7 2,912,240 - SGL_RS15425 0.24 -2.7 2,912,240 - SGL_RS15425 0.24 -2.9 2,912,334 + SGL_RS15425 0.32 -2.4 2,912,337 - SGL_RS15425 0.33 -3.0 2,912,622 - SGL_RS15425 0.60 -2.1 2,912,779 + SGL_RS15425 0.75 -2.9 2,912,842 + SGL_RS15425 0.80 -1.6
Or see this region's nucleotide sequence